DO NOT SQUASH Add PyOP2 to Firedrake repository #92
Workflow file for this run
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| name: PyOP2 | |
| # Trigger the workflow on push or pull request, | |
| # but only for the master branch | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # Don't immediately kill all if one Python version fails | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12', '3.13'] | |
| env: | |
| CC: mpicc | |
| PETSC_DIR: ${{ github.workspace }}/petsc | |
| PETSC_ARCH: default | |
| RDMAV_FORK_SAFE: 1 | |
| PYOP2_CI_TESTS: 1 | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Install system dependencies | |
| shell: bash | |
| run: | | |
| sudo apt update | |
| sudo apt install build-essential mpich libmpich-dev \ | |
| libblas-dev liblapack-dev gfortran libhwloc-dev libfabric-dev | |
| - name: Set correct Python version | |
| uses: actions/setup-python@v5 | |
| id: setup-python | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # By default setup-python pollutes the environment in such a way that virtual | |
| # environments cannot be used. This prevents us from building libsupermesh because | |
| # it relies on having rtree installed into a venv. | |
| # https://github.com/actions/setup-python/issues/851 | |
| # https://github.com/actions/setup-python/blob/main/docs/advanced-usage.md#using-update-environment-flag | |
| update-environment: false | |
| - name: Create virtual environment | |
| shell: bash | |
| run: | | |
| ${{ steps.setup-python.outputs.python-path }} -m venv venv | |
| - name: Clone PETSc | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: firedrakeproject/petsc | |
| path: ${{ env.PETSC_DIR }} | |
| - name: Build and install PETSc | |
| shell: bash | |
| working-directory: ${{ env.PETSC_DIR }} | |
| run: | | |
| ./configure \ | |
| --download-hdf5 \ | |
| --with-debugging=1 \ | |
| --with-shared-libraries=1 \ | |
| --with-c2html=0 \ | |
| --with-fortran-bindings=0 | |
| make | |
| - name: Install libsupermesh | |
| shell: bash | |
| run: | | |
| source venv/bin/activate | |
| python -m pip install 'rtree>=1.2' | |
| git clone https://github.com/firedrakeproject/libsupermesh.git | |
| mkdir -p libsupermesh/build | |
| cd libsupermesh/build | |
| cmake .. \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DCMAKE_INSTALL_PREFIX="$VIRTUAL_ENV" \ | |
| -DMPI_C_COMPILER=mpicc \ | |
| -DMPI_CXX_COMPILER=mpicxx \ | |
| -DMPI_Fortran_COMPILER=mpif90 \ | |
| -DCMAKE_Fortran_COMPILER=mpif90 \ | |
| -DMPIEXEC_EXECUTABLE=mpiexec | |
| make | |
| make install | |
| - name: Checkout PyOP2 | |
| uses: actions/checkout@v4 | |
| with: | |
| path: PyOP2 | |
| - name: Install PyOP2 dependencies | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| source ../venv/bin/activate | |
| python -m pip install -U pip | |
| python -m pip install -U pytest-timeout | |
| - name: Install PyOP2 | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| source ../venv/bin/activate | |
| python -m pip install -v ".[test]" | |
| - name: Run tests | |
| shell: bash | |
| working-directory: PyOP2 | |
| run: | | |
| source ../venv/bin/activate | |
| # Running parallel test cases separately works around a bug in pytest-mpi | |
| pytest -k "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
| mpiexec -n 3 pytest -k "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
| timeout-minutes: 10 |