Version 1.2.6

filak · Mar 14, 2019 · 220c1fb · 220c1fb
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diff --git a/flask-app/!!build__mtw-server-win-service.bat b/flask-app/!!build__mtw-server-win-service.bat
@@ -0,0 +1,48 @@
+@echo off
+setlocal
+echo.
+echo Build using pyinstaller
+set targetDir=dist
+set fileHandle=mtw-server-win-service
+set srcFile=%fileHandle%.py
+set srcDir=mtw
+set logFile=!build_%fileHandle%.rep
+
+echo. > %logFile%
+
+echo.
+echo rem call %targetDir%\%fileHandle%.exe stop
+
+echo.
+echo Building %srcFile% ...
+
+rem CALL c:\Python37\Scripts\pyinstaller.exe --log-level ERROR --onedir -y --hidden-import=_cffi_backend --distpath %targetDir% %srcFile% >> %logFile% 2>&1
+CALL c:\Python37\Scripts\pyinstaller.exe --log-level ERROR --onefile --hidden-import=_cffi_backend --distpath %targetDir% %srcFile% >> %logFile% 2>&1
+
+echo  - Done!
+echo.
+echo Cleaning static files %targetDir% ...
+
+RMDIR %targetDir%\static /S /Q
+RMDIR %targetDir%\templates /S /Q
+
+echo  - Done!
+echo.
+echo Copying files...
+
+MKDIR %targetDir%\static
+xcopy %srcDir%\static %targetDir%\static /E /Q /Y
+MKDIR %targetDir%\templates
+xcopy %srcDir%\templates %targetDir%\templates /E /Q /Y
+echo  - Done!
+echo.
+
+echo.
+echo rem call %targetDir%\%fileHandle%.exe install
+echo.
+echo rem call %targetDir%\%fileHandle%.exe start
+
+echo Finished
+echo.
+
+endlocal
diff --git a/flask-app/!!build__mtw-server-win-worker.bat b/flask-app/!!build__mtw-server-win-worker.bat
@@ -0,0 +1,32 @@
+@echo off
+setlocal
+echo.
+echo Build using pyinstaller
+set targetDir=dist
+set fileHandle=mtw-server-win-worker
+set srcFile=%fileHandle%.py
+set logFile=!build_%fileHandle%.rep
+
+echo. > %logFile%
+
+echo.
+echo rem call %targetDir%\%fileHandle%.exe stop
+
+echo.
+echo Building %srcFile% ...
+
+rem CALL c:\Python37\Scripts\pyinstaller.exe --log-level ERROR --onedir -y --distpath %targetDir% %srcFile% >> %logFile% 2>&1
+CALL c:\Python37\Scripts\pyinstaller.exe --log-level ERROR --onefile --distpath %targetDir% %srcFile% >> %logFile% 2>&1
+
+echo  - Done!
+
+
+echo.
+echo rem call %targetDir%\%fileHandle%.exe install
+echo.
+echo rem call %targetDir%\%fileHandle%.exe start
+
+echo Finished
+echo.
+
+endlocal
diff --git a/flask-app/!!build__set-mtw-admin.bat b/flask-app/!!build__set-mtw-admin.bat
@@ -0,0 +1,22 @@
+@echo off
+setlocal
+echo.
+echo Build using pyinstaller
+set targetDir=dist
+set fileHandle=set-mtw-admin
+set srcFile=%fileHandle%.py
+set logFile=!build_%fileHandle%.rep
+
+echo. > %logFile%
+
+echo.
+echo Building %srcFile% ...
+
+rem CALL c:\Python37\Scripts\pyinstaller.exe --log-level ERROR --onedir -y --hidden-import=_cffi_backend --distpath %targetDir% %srcFile% >> %logFile% 2>&1
+CALL c:\Python37\Scripts\pyinstaller.exe --log-level ERROR --onefile --hidden-import=_cffi_backend --distpath %targetDir% %srcFile% >> %logFile% 2>&1
+
+echo.
+echo Finished
+echo.
+
+endlocal
diff --git a/flask-app/instance/_data/in/README.md b/flask-app/instance/_data/in/README.md
@@ -0,0 +1 @@
+## This is the datasets input folder
diff --git a/flask-app/instance/_data/out/README.md b/flask-app/instance/_data/out/README.md
@@ -0,0 +1 @@
+## This is the datasets ouput folder
diff --git a/flask-app/instance/conf/js_all_stru.json b/flask-app/instance/conf/js_all_stru.json
@@ -0,0 +1,74 @@
+{
+  "descriptors": {
+    "D1...": {
+      "eng": "dname_eng",
+      "trx": "dname_trx",
+      "active": "false",
+      "dc": "1",
+      "pa": [
+        "D..."
+      ]
+    },
+    "D2...": {
+      "eng": "dname_eng",
+      "trx": "dname_trx",
+      "active": "false",
+      "dc": "1",
+      "pa": [
+        "D..."
+      ]
+    }
+  },
+  "descriptors_eng": [
+    {
+      "<dname_eng>": "D..."
+    }
+  ],
+  "descriptors_trx": [
+    {
+      "<dname_trx>": "D..."
+    }
+  ],
+  "qualifiers": {
+    "Q1...": {
+      "eng": "<qname_eng>",
+      "trx": "<qname_trx>",
+      "active": "false"
+    },
+    "Q2...": {
+      "eng": "<qname_eng>",
+      "trx": "<qname_trx>",
+      "active": "false"
+    }
+  },
+  "qualifiers_eng": [
+    {
+      "<qname_engA>": {
+        "id": "Q...",
+        "eng": "<qname_eng>",
+        "trx": "<qname_trx>",
+        "active": "false"
+      },
+      "<qname_engB>": {
+        "id": "Q...",
+        "eng": "<qname_eng>",
+        "trx": "<qname_trx>",
+        "active": "false"
+      }
+    }
+  ],
+  "qualifiers_trx": [
+    {
+      "<qname_trxA>": {
+        "id": "Q...",
+        "eng": "<qname_eng>",
+        "trx": "<qname_trx>"
+      },
+      "<qname_trxB>": {
+        "id": "Q...",
+        "eng": "<qname_eng>",
+        "trx": "<qname_trx>"
+      }
+    }
+  ]
+}
diff --git a/flask-app/instance/conf/mesh.ttl b/flask-app/instance/conf/mesh.ttl
@@ -0,0 +1,119 @@
+@prefix :        <http://localhost/jena_example/#> .
+@prefix rdf:     <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+@prefix rdfs:    <http://www.w3.org/2000/01/rdf-schema#> .
+@prefix tdb2:    <http://jena.apache.org/2016/tdb#> .
+@prefix ja:      <http://jena.hpl.hp.com/2005/11/Assembler#> .
+@prefix text:    <http://jena.apache.org/text#> .
+@prefix fuseki:  <http://jena.apache.org/fuseki#> .
+@prefix meshv:   <http://id.nlm.nih.gov/mesh/vocab#> .
+@prefix mesht:   <http://www.medvik.cz/schema/mesh/vocab/#> .
+@prefix meshcs:  <http://mesh.medvik.cz/link/> .
+
+### Version 1.0.1
+
+## Initialize text query
+[] ja:loadClass       "org.apache.jena.query.text.TextQuery" .
+# A TextDataset is a regular dataset with a text index.
+text:TextDataset      rdfs:subClassOf   ja:RDFDataset .
+# Lucene index
+text:TextIndexLucene  rdfs:subClassOf   text:TextIndex .
+# Elasticsearch index
+text:TextIndexES    rdfs:subClassOf   text:TextIndex .
+
+## ---------------------------------------------------------------
+## This URI must be fixed - it's used to assemble the text dataset.
+
+:text_dataset
+    a text:TextDataset ;
+    text:dataset   <#dataset> ;
+    text:index     <#indexLucene> ;
+    .
+
+# A TDB dataset used for RDF storage
+<#dataset> 
+    a tdb2:DatasetTDB2 ;
+    tdb2:location  "c:\\Data\\mesh-mtw\\apache-jena-data/databases/mesh" ;
+    .
+
+# Text index description
+<#indexLucene> 
+    a text:TextIndexLucene ;
+    text:directory "c:\\Data\\mesh-mtw\\apache-jena-data/indexes/mesh" ;
+    text:entityMap <#entMap> ;
+    text:storeValues true ;
+    ##text:analyzer[ a text:StandardAnalyzer ] ;
+    text:analyzer [
+       a text:ConfigurableAnalyzer ;
+       text:tokenizer text:StandardTokenizer ;
+       text:filters (text:ASCIIFoldingFilter text:LowerCaseFilter)
+       ] ;
+    ##text:queryAnalyzer [ a text:KeywordAnalyzer ] ;
+    text:queryParser text:AnalyzingQueryParser ;
+    ##text:defineAnalyzers [ . . . ] ;
+    text:multilingualSupport true ;
+ .
+
+<#entMap> 
+    a text:EntityMap ;
+    text:defaultField     "ftext" ;
+    text:entityField      "uri" ;
+    text:uidField         "uid" ;
+    text:langField        "lang" ;
+    text:graphField       "graph" ;
+    text:map (
+         [ text:field "ftext" ; text:predicate rdfs:label ]
+         [ text:field "ftext" ; text:predicate meshv:abbreviation ]
+         [ text:field "ftext" ; text:predicate meshv:annotation ]
+         [ text:field "ftext" ; text:predicate meshv:historyNote ]
+         [ text:field "ftext" ; text:predicate meshv:identifier ]
+         [ text:field "ftext" ; text:predicate meshv:prefLabel ]
+         [ text:field "ftext" ; text:predicate meshv:altLabel ]
+         [ text:field "ftext" ; text:predicate meshv:casn1_label ]
+         [ text:field "ftext" ; text:predicate meshv:note ]
+         [ text:field "ftext" ; text:predicate meshv:onlineNote ]
+         [ text:field "ftext" ; text:predicate meshv:publicMeSHNote ]
+         [ text:field "ftext" ; text:predicate meshv:source ]
+         [ text:field "ftext" ; text:predicate meshv:scopeNote ]
+         [ text:field "ftext" ; text:predicate mesht:abbreviation ]
+         [ text:field "ftext" ; text:predicate mesht:annotation ]
+         [ text:field "ftext" ; text:predicate mesht:historyNote ]
+         [ text:field "ftext" ; text:predicate mesht:identifier ]
+         [ text:field "ftext" ; text:predicate mesht:prefLabel ]
+         [ text:field "ftext" ; text:predicate mesht:altLabel ]
+         [ text:field "ftext" ; text:predicate mesht:scopeNote ]
+         [ text:field "ftext" ; text:predicate mesht:translatorsNote ]
+         ) .
+
+### mesh common:
+## abbreviation
+## annotation
+## historyNote
+## identifier
+## prefLabel
+## altLabel
+## scopeNote
+
+### MeSH master only:
+## rdfs:label
+## meshv:casn1_label
+## meshv:note
+## meshv:onlineNote
+## meshv:publicMeSHNote
+## meshv:source
+
+### Translation only:
+## mesht:translatorsNote
+
+<#service_text_tdb> 
+    a fuseki:Service ;
+    rdfs:label                      "MeSH-Translation-service" ;
+    fuseki:name                     "mesh" ;
+    fuseki:serviceQuery             "query" ;
+    fuseki:serviceQuery             "sparql" ;
+    fuseki:serviceUpdate            "update" ;
+    fuseki:serviceUpload            "upload" ;
+    fuseki:serviceReadGraphStore    "get" ;
+    fuseki:serviceReadWriteGraphStore    "data" ;
+    fuseki:dataset                  :text_dataset ;
+    .
+