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  1. seq_factotum seq_factotum Public

    A package for fast genomic sequences manipulation or interrogation

    C++

  2. forACT forACT Public

    Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints

    C++ 2

  3. random_subreads random_subreads Public

    Subsample reads from a fastq/fasta file to a desired read depth. Choose random selection or new mean read length

    Python 1

  4. EBI_NGS_Assembly EBI_NGS_Assembly Public

    Practical exercises for the EBI NGS Course -- Assembly

    Shell 1

  5. YeastStrainsStudy YeastStrainsStudy Public

    Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemb…

    Shell 3 5

  6. n50 n50 Public

    C++ code to evaluate basic stats for a fasta/fastq(.gz) file

    C++ 5