A package for modules identification using evolutionary algorithms.
- EAModules: core functions of evolutionary algorithms for module identification.
- functions: core functions of evolutionary algorithms including SA, GA and MA.
- utils: utilities for supporting core functions like connected component finding and fitness.
- R: R code of genetic algorithm, modified from COSINE package.
- data: benchmark and real-world data.
- examples: example scripts to call functions, including supplementary files used in the paper.
To construct PPI network, check another package https://github.com/fairmiracle/PPINet.
Active module identification in intracellular networks using a memetic algorithm with a new binary decoding scheme. BMC Genomics 2017 18(Suppl 2):209. Link
For any questions, please contact Dong Li at [email protected].