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Merge pull request #147 from joerivandervelde/main
Updates for EMX2 generation
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| tableName,tableType,semantics | ||
| "InclusionCriteria","ONTOLOGIES","http://purl.obolibrary.org/obo/OBI_0500027" | ||
| "GenderIdentity","ONTOLOGIES","http://purl.bioontology.org/ontology/MESH/D005783" | ||
| "GenderAtBirth","ONTOLOGIES","http://purl.obolibrary.org/obo/GSSO_009418" | ||
| "GenotypicSex","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C168871" | ||
| "CountryOfResidence","ONTOLOGIES","http://purl.obolibrary.org/obo/GENEPIO_0001830" | ||
| "Ancestry","ONTOLOGIES","http://purl.obolibrary.org/obo/HANCESTRO_0004" | ||
| "CountryOfBirth","ONTOLOGIES","http://purl.obolibrary.org/obo/GENEPIO_0001830" | ||
| "InclusionStatus","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C19332" | ||
| "PrimaryAffiliatedInstitute","ONTOLOGIES","http://semanticscience.org/resource/SIO_000688" | ||
| "ResourcesInOtherInstitutes","ONTOLOGIES","http://semanticscience.org/resource/SIO_000688" | ||
| "ConsentFormCreator","ONTOLOGIES","http://semanticscience.org/resource/SIO_000688" | ||
| "CollectedBy","ONTOLOGIES","http://semanticscience.org/resource/SIO_000688" | ||
| "RepresentedBy","ONTOLOGIES","http://purl.obolibrary.org/obo/BFO_0000023" | ||
| "DataUsePermissions","ONTOLOGIES","http://purl.obolibrary.org/obo/DUO_0000001" | ||
| "DataUseModifiers","ONTOLOGIES","http://purl.obolibrary.org/obo/DUO_0000017" | ||
| "AllowRecontacting","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C176244" | ||
| "Phenotype","ONTOLOGIES","https://www.wikidata.org/wiki/Property:P3841" | ||
| "UnobservedPhenotype","ONTOLOGIES","https://www.wikidata.org/wiki/Property:P3841" | ||
| "PhenotypicDataAvailable","ONTOLOGIES","http://purl.org/dc/terms/DCMIType" | ||
| "ClinicalDiagnosis","ONTOLOGIES","http://edamontology.org/data_3667" | ||
| "MolecularDiagnosisGene","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C16612" | ||
| "Medication","ONTOLOGIES","http://edamontology.org/data_3103" | ||
| "FamilyMembersAffected","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C71384" | ||
| "FamilyMembersSequenced","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C71384" | ||
| "MedicalHistory","ONTOLOGIES","http://scdontology.h3abionet.org/ontology/SCDO_1000093" | ||
| "BiospecimenType","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C70699" | ||
| "AnatomicalSource","ONTOLOGIES","http://purl.obolibrary.org/obo/UBERON_0001062" | ||
| "PathologicalState","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C164617" | ||
| "StorageConditions","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C96145" | ||
| "AnalysesPerformed","ONTOLOGIES","http://edamontology.org/topic_3391" | ||
| "LibraryPreparationKit","ONTOLOGIES","http://purl.obolibrary.org/obo/GENEPIO_0000081" | ||
| "TargetEnrichmentKit","ONTOLOGIES","http://purl.obolibrary.org/obo/GENEPIO_0000081" | ||
| "SequencingPlatform","ONTOLOGIES","http://purl.obolibrary.org/obo/GENEPIO_0000071" | ||
| "SequencingInstrumentModel","ONTOLOGIES","http://purl.obolibrary.org/obo/GENEPIO_0001921" | ||
| "SequencingMethod","ONTOLOGIES","http://purl.obolibrary.org/obo/NCIT_C17565" | ||
| "DataFormatsStored","ONTOLOGIES","http://edamontology.org/format_1915" | ||
| "ReferenceGenomeUsed","ONTOLOGIES","http://edamontology.org/data_2787" |
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