Source code for manuscript:
Optimizing differential equations to fit data and predict outcomes
by Steven A. Frank, https://stevefrank.org
License CC-By 4.0: https://creativecommons.org/licenses/by/4.0/
Directory output/ with all parameters and output data for runs used in manuscript only available on Zenodo at https://doi.org/10.5281/zenodo.6463624
Source code also at GitHub at https://github.com/evolbio/FitODE
Preprint illustrating what can be done with this code at:
https://arxiv.org/abs/2204.07833
The main code is on the git branch unifed. A small piece of code to calculate the loss values of the predicted trajectories for the test period [60,90] in Figure 4 is on the branch predict_loss.