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@esteinig esteinig released this 23 Mar 04:48
· 75 commits to main since this release
0.5.0
d80f9bd
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Learn about vigilant mode.

Command line:

  • --paf | --bam input with "-" for reading from stdin
  • changed long name of --cov-reg to --regions

Main:

  • added SAM/BAM/CRAM support [#3]
  • rewrote interval parsing for PAF format [#8]
  • fixed bug in filtering coverage plot outputs [#9]
  • added table output confirmation test [#5]
  • added basic BAM reader tests, including query alignment length from CIGAR [#5]
  • reimplemented custom PAF parser due to variable CIGAR tags [#8]

Other:

  • replaced noodles fasta parsing with rust-bio
  • removed csv crate

Test coverage:

  • couldn't figure out one line for file name match statement [#14]
  • slight regression in coverage from reader functions
Assets 2
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