Merge pull request #446 from RichardMN/fix-netherlands-430-remove-hos…

…pitalisation Adjust for Netherlands - remove Hospitalisation data - partial fix for #430
epiforecasts · Feb 5, 2022 · 579f853 · 579f853
2 parents e4b57dd + ed1a14d
commit 579f853
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Showing 4 changed files with 3 additions and 4 deletions.
diff --git a/R/Netherlands.R b/R/Netherlands.R
@@ -38,7 +38,7 @@ Netherlands <- R6::R6Class("Netherlands",
     ),
     # nolint end
     #' @field source_data_cols existing columns within the raw data
-    source_data_cols = c("cases_new", "deaths_new", "hosp_new"),
+    source_data_cols = c("cases_new", "deaths_new"),
     #' @field source_text Plain text description of the source of the data
     source_text = "National Institute for Public Health and the Environment (RIVM), Netherlands", # nolint
     #' @field source_url Website address for explanation/introduction of the
@@ -60,7 +60,6 @@ Netherlands <- R6::R6Class("Netherlands",
         mutate(
           Date_of_publication = ymd(.data$Date_of_publication),
           Total_reported = as.double(.data$Total_reported),
-          Hospital_admission = as.double(.data$Hospital_admission),
           Deceased = as.double(.data$Deceased),
           level_1_region_code = sub("[a-z].*-", "", .data$Province),
           level_1_region_code = paste0(
@@ -74,8 +73,8 @@ Netherlands <- R6::R6Class("Netherlands",
           level_2_region = .data$Municipality_name,
           level_2_region_code = .data$Municipality_code,
           cases_new = .data$Total_reported,
-          deaths_new = .data$Deceased,
-          hosp_new = .data$Hospital_admission
+          deaths_new = .data$Deceased #,
+          #hosp_new = .data$Hospital_admission
         )
     },
 

diff --git a/data/all_country_data.rda b/data/all_country_data.rda
diff --git a/tests/testthat/custom_data/Netherlands_level_1.rds b/tests/testthat/custom_data/Netherlands_level_1.rds
diff --git a/tests/testthat/custom_data/Netherlands_level_2.rds b/tests/testthat/custom_data/Netherlands_level_2.rds