Refactor transformation, remove the larck approach

Simplification of the transformation process to a full python approach

Merged version between FAIDARE and Datadiscovery

Feat/find by germplasm and trait names (#62)

* Add generation of germplasm names list for studies

* Add traitNames field in datadiscovery

Fusion faidare-datadiscovery

Merge pull request #56 from elixir-europe/merge-faidare-dd

Merge faidare dd

Premerging of fusion faidare-datadiscovery-legacy

Premerging of fusion faidare-datadiscovery

v1.0.7 release

• Add compatibility with BrAPI from v1 to v1.3
• Add JSON validation on strictly needed BrAPI fields
• Update dependencies
• Simplify the configuration folder structure
• Refactor python packages

v1.0.6 release

• Simplify the data discovery document schema for the Elixir GnpIS data lookup service
• Add better binary distribution using Git LFS
• Add documentation on usage

v1.0.5 bug fix release

• Fix error on empty input JSON

v1.0.4 bug fix release

Bug fixes

• Fix possible concurrent file writes using randomness in folder name during BrAPI object indexing on disk.
• Fix incoherent json file writes missing flush before close.
• Fix unexpected JSONDecode error flushing the file system write cache.
• Fix bulk json naming
• Fix URI generation using URL encoding.
• Add error reporting on JSON decode error
• Add documentation on how to release the project.

v1.0 release

Fix package requirements, fix datadiscovery document description gene…

…ration, fix documentation, fix binary distribution script.

prototype

Earlier prototype version with ElasticSearch (JSON) & Virtuoso (JSON-LD & RDF) transformation