Merge pull request #81 from Rohan-cod/simple-variant-extraction

Updated logic for simple variant extraction
elimuinformatics · Jun 21, 2021 · 0724ba7 · 0724ba7
2 parents 73e3a1d + 70ba202
commit 0724ba7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/vcf2fhir/json_generator.py b/vcf2fhir/json_generator.py
@@ -210,7 +210,7 @@ def _get_fhir_json(
                         not conversion_region or
                         conversion_region[
                             record.CHROM,
-                            record.POS - 1: record.POS
+                            record.POS - 1: (record.POS + len(record.REF) - 1)
                         ].empty is False):
                     _add_record_variants(
                         record, ref_seq, patientID, fhir_helper, ratio_ad_dp)