fix logistic regression param rename #129
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name: Tests | |
on: | |
push: | |
branches: | |
- master | |
- main | |
pull_request: | |
branches: | |
- master | |
- main | |
workflow_dispatch: | |
schedule: | |
- cron: '0 0 * * 0' | |
env: | |
PACKAGE_NAME: pymer4 | |
defaults: | |
run: | |
# login shell to source the conda hook in .bash_profile | |
shell: | |
bash -l {0} | |
jobs: | |
ci: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: true | |
matrix: | |
py_ver: [3.8, 3.9, '3.10', 3.11] | |
os: [ubuntu-latest] | |
steps: | |
# ------------------------------------------------------------ | |
# Step up miniconda | |
- name: Download Miniconda | |
uses: conda-incubator/setup-miniconda@059455a698430d8b68fa317268fa2e3da3492a98 | |
with: | |
miniconda-version: "latest" | |
python-version: ${{ matrix.py_ver }} | |
# ------------------------------------------------------------ | |
# Get code | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
# ------------------------------------------------------------ | |
# Setup conda build environment and build package | |
# env defined here are just for convenience when writing bash commands | |
- name: Install package | |
env: | |
PY_VER: ${{ matrix.py_ver }} | |
run: | | |
conda config --set always_yes yes --set changeps1 no | |
conda create -n pkg_test -c conda-forge python=$PY_VER 'r-lmerTest' 'r-emmeans' 'rpy2' | |
conda activate pkg_test | |
pip install -r requirements-dev.txt | |
pip install . | |
# ------------------------------------------------------------ | |
# Run tests | |
- name: Test installation and Run Test Suite | |
run: | | |
conda activate pkg_test | |
python -c "from pymer4.test_install import test_install; test_install()" | |
black --version | |
black --check --verbose . | |
pytest pymer4/tests | |
# ------------------------------------------------------------ | |
# Build docs | |
- name: Build Docs | |
run: | | |
conda activate pkg_test | |
cd docs && make clean && make html |