API Pipeline

A REST API to pilot the Ecotaxa pipelines

requirement

pip install fastapi
pip install pydantic
pip install "uvicorn[standard]"
<!-- pip3 install opencv-python -->
pip install opencv-python
pip install requests
pip install numpy

run it to dev

uvicorn main:app --reload

ne fonctionne pas en venv ????? why ???

online docs

http://127.0.0.1:8000/docs http://127.0.0.1:8000/redoc

venv

create it

python3 -m venv .venv

or

virtualenv -p python3.9.6 venv

use it

source .venv/bin/activate

dependencies

cf. requirement

pip install pytest 

leave it

deactivate

run DEEP-OC-multi_plankton_separation container

ssh niko cd ~/complex/DEEP-OC-multi_plankton_separation

build the container

docker build -t deephdc/uc-emmaamblard-deep-oc-multi_plankton_separation .

run it to have interactive shell

~/complex/DEEP-OC-multi_plankton_separation$ docker run -ti -p 5000:5000 -p 6006:6006 -p 8888:8888 deephdc/uc-emmaamblard-deep-oc-multi_plankton_separation

run it in detach mode

~/complex/DEEP-OC-multi_plankton_separation$ docker run -d -ti -p 5000:5000 -p 6006:6006 -p 8888:8888 deephdc/uc-emmaamblard-deep-oc-multi_plankton_separation

change local port 8888 to 8889, because already use by another container, which ????

~/complex/DEEP-OC-multi_plankton_separation$ docker run -d -ti -p 5000:5000 -p 6006:6006 -p 8889:8888 deephdc/uc-emmaamblard-deep-oc-multi_plankton_separation

Test with Thunder Client

use the collection named Happy Pipeline

test happy pipeline : to see if server alive

test DEEP plankton separation - niko alive ? : to see if multi_plankton_separation is alive on Niko server

#docker

docker build -t gateway_api .

Build

docker run -p 8000:8000 -v /Users/sebastiengalvagno/piqv/plankton/:/app/data --name happy_pipeline gateway_api

when use Docker use .env.production else .env.development

at this moment, I can't run in docker because the path are linked to other apps then it can't find the file

a possibility, to use docker, is to make the very long local path in the container and use .env.development