Skip to content
@ebi-gene-expression-group

EBI Gene Expression Group

Popular repositories Loading

  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 38 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 28 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 16 5

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 16 12

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 13 2

Repositories

Showing 10 of 178 repositories
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 30 5 Updated Jul 10, 2024
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 68 5 Updated Jul 10, 2024
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 3 1 Updated Jul 10, 2024
  • galaxy-gxa-tools-setup Public

    Standard tool installation for GXA Galaxy instances

    ebi-gene-expression-group/galaxy-gxa-tools-setup’s past year of commit activity
    Python 0 2 0 0 Updated Jul 9, 2024
  • db-scxa Public

    An AtlasProd module for loading scxa-analytics data to postgres.

    ebi-gene-expression-group/db-scxa’s past year of commit activity
    Shell 2 1 4 2 Updated Jul 8, 2024
  • container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    ebi-gene-expression-group/container-galaxy-sc-tertiary’s past year of commit activity
    Python 16 MIT 12 24 14 Updated Jul 8, 2024
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 13 Apache-2.0 2 5 2 Updated Jul 5, 2024
  • scanpy-scripts Public

    Scripts for using scanpy

    ebi-gene-expression-group/scanpy-scripts’s past year of commit activity
    Python 28 Apache-2.0 13 11 4 Updated Jul 5, 2024
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 1 1 Updated Jul 4, 2024
  • atlas-anndata Public

    Tools for anndata generation/ consumption for Expression Atlas

    ebi-gene-expression-group/atlas-anndata’s past year of commit activity
    Python 0 Apache-2.0 0 1 2 Updated Jun 28, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…