CNVs

Refer to the notebook 'GP2_CNVs.ipynb' for current pipeline run on Biowulf (NIH slurm system)

Name		Name	Last commit message	Last commit date
Latest commit History 25 Commits
CNV		CNV
bin		bin
GP2_CNVs.ipynb		GP2_CNVs.ipynb
GP2_CNVs_no_qc.ipynb		GP2_CNVs_no_qc.ipynb
README.md		README.md
__init__.py		__init__.py
extract_gene_metrics.py		extract_gene_metrics.py
extract_snp_metrics.py		extract_snp_metrics.py
run_cnv_dosage_pipeline.py		run_cnv_dosage_pipeline.py
run_cnv_pipeline.py		run_cnv_pipeline.py
run_cnv_qc_pipeline.py		run_cnv_qc_pipeline.py
run_cnvwas_pipeline.py		run_cnvwas_pipeline.py
run_snp_metrics_pipeline.py		run_snp_metrics_pipeline.py
update_cnv_ids.py		update_cnv_ids.py

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