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1. PZQ_POPGEN PZQ_POPGEN Public

   Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

   2 1

2. SM_VARIATION SM_VARIATION Public

   Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni

3. schisto_livestock_hybrids schisto_livestock_hybrids Public

   Code repository for the publication: "Genomic evidence of contemporary hybridization between Schistosoma species"

   Python 1

4. nxf-BATQual nxf-BATQual Public

   Bacterial genome assembly, annotation and typing pipeline.

   Python

5. PGL_cgMLST PGL_cgMLST Public

   Code repository for an upcoming publication focused on pneumococcal genome characterization.

   Python 1

6. useful_scripts useful_scripts Public

   Accessory scripts for file manipulation and other analyses

   Python