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  1. metaphlan2strainphlan metaphlan2strainphlan Public

    Pipeline carries out taxonomy analysis on metagenomic sequencing by pre-processing reads and using MetaPhlAn and StrainPhlAn.

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  2. data_submission_scripts data_submission_scripts Public

    Scripts to aid with completing metadata forms and uploading data to online repositories, namely NCBI's SRA.

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  3. nf-core-viralreconlofreq nf-core-viralreconlofreq Public

    Pipeline cloned from viralrecon with amendments to include the lofreq variant caller which can merge results with other available callers after alignment genera tes .bam files.

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