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Version 1.2

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@draeger draeger released this 20 Jul 10:32
· 596 commits to master since this release

New features:

  • A new pom.xml file has been added to the project in order to support Maven for this library.
  • The new interface ParameterizedDESystem has been implemented in order to facilitate the change of values for some elements of a differential equation system.
  • The user can now decide whether to determine the amount or the concentration of a species.
  • A wrapper class for the SBML Test Suite has been added.
  • Simulation Core Library now supports all models of the SBML test suite (release 23).
  • Import of CSV files is now possible.
  • Distance functions for comparison with experimental data are included in the library.
  • KiSAO terms of integration routines are included.

Changes in this version:

  • Renamed getNumAdditionalValues() in RichDESystem to getAdditionalValueCount() in order to be compliant with many other Java classes.
  • The processing of the ASTNodes has been improved.
  • The API documentation has been improved.

Bug fixes:

  • There was an error in the calculation of the concentration of some species: Sometimes the amount was not divided by the associated compartment's size.