Releases: dpmcsuss/iGraphMatch
Releases · dpmcsuss/iGraphMatch
iGraphMatch 2.0.5
- More changes for igraph 2.0.x to avoid warnings due to use of deprecated functions.
- Changes to address #67.
init_start
and other functions withstart = 'rds_perm_bari'
andstart = 'rds_from_sim_start'
will now work correctly. - Updates to documentation on value returned by
gm
to better explain the list elements that are components ofgraphMatch
class.
iGraphMatch 2.0.4
- Updates for igraph 2.0.x.
- Use
igraph::upgrade_graph
on the Enron and C.Elegans data. - Explicitly cast
nnodes
to integer inidentity_match
function.
- Use
iGraphMatch 2.0.3
- Updates for changes in Matrix version 1.6-2
iGraphMatch 2.0.2
- Updates for changes in Matrix version 1.5-5+
iGraphMatch 2.0.1
- Updates for changes to Matrix package
iGraphMatch 2.0.0
Breaking Changes
- All
graph_match_
functions have been consolidated into one function calledgm
that takes a method argument indicating which of the methods to use. This will break pretty much any code but was instituted to improve flexibility and extensibility going forward. The returned values for these functions should be relatively consistent with the older values except that they'll have a lot more functionality through thegraphMatch
class. get_perm
is now calledget_perm_mat
and is more flexible, taking a graph match object.- Removed
match_report
,edge_match_info
,match_plot_igraph
,match_plot_matrix
,matched_adjs
. Instead use methods associated withgraphMatch
class such assummary
,plot
,%*%
etc. sample_correlated_rdpg
is nowsample_correlated_rdpg_pair
.lapjv
andlapmod
functions are now accessed solely throughdo_lap
.- Most start functions are removed and can be accessed through
init_start
. - row_cor, row_diff, row_perm_stat have been removed and are now accessed through
best_matches
. sample_*_with_junk
functions are removed. Instead use the normalsample_*
functions with thencore
parameter.gm_expand_when_stuck
is removed and can be accessed by specifyingExpandWhenStuck = TRUE
when callinggm
withmethod = "percolation"
.
List of all removed functions
bari_start
,edge_match_info
,get_perm
,gm_indefinite
,graph_match_ExpandWhenStuck
,graph_match_FW
,graph_match_IsoRank
,graph_match_PATH
,graph_match_Umeyama
,graph_match_convex
,graph_match_percolation
,lapjv
,lapmod
,match_plot_igraph
,match_plot_matrix
,match_report
,matched_adjs
,rds_from_sim_start
,rds_perm_bari_start
,rds_sinkhorn_start
,row_cor
,row_diff
,row_perm_stat
,rperm
,sample_correlated_gnp_pair_w_junk
,sample_correlated_sbm_pair_w_junk
,
New features
- Implemented
graphMatch
class for inspecting and using matches. as.graphMatch
can convert data.frames and matrices to thegraphMatch
class.- The
method
argument ingm
can also take a function so that you can leverage thegraph_match
class and error checking ofgm
. best_matches
will compute precision at k if given the true labels.
Minor improvements and fixes
- Lots of small fixes.
- Convenience function
largest_cc
for finding largest connected component. - Improved documentation
- The
check_graph
function is now exported to prepare graphs outside ofgm
functions. matrix_list
s can now be named lists.
CRAN v1.0.1
Fixes error on Solaris build (hopefully).
CRAN v1.0.0
Merge pull request #38 from dpmcsuss/dev CRAN Submission Accepted 1.0.0
v0.0.2-beta
Relatively stable.