dxCompiler 2.10.0

• CWL: All tasks and workflows conformance tests now pass
• CWL: Allow a valid CWL identifier that starts with a number or other characters disallowed by the DNAnexus platform
  • Valid CWL IDs starting with disallowed characters will be padded with an extra "___" when generating the full encoded name, which will still be a valid CWL ID (as an URI) when decoded
• CWL: Fix to an error with execution of nested workflow step due to incorrect step identifiers. Previously it prevented running of workflows with the --single-process flag.
• WDL: Minor fixes with directory path handling when passing -separateOutputs flag
  • When a workflow was compiled with the -separateOutputs flag, it would result in an error at runtime saying "InvalidInput: Folder path must start with /."
• WDL: Fix an issue with optional identifiers not found when they were a part of an unused expression
• Fix an issue where a dbcluster object stored in a project in which a workflow was run was causing a runtime error, if the workflow was compiled with the -reorg flag.

Dependency updates

dxApi 0.13.2

• Added database and dbcluster to the list of DNAnexus data objects that are recognized and can be described

dxFileAccessProtocols 0.5.4

• Fix to the issue where -separateOutputs option was causing a dx API runtime error due to a missing leading / in folder path

wdlTools 0.17.8

• Input variables are now evaluated and added to the dependency graph, even when they are optional and not used. They need to be a part of the graph in the case when they are assigned to other (unused) variables for a proper expression evaluation.