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1. NaroNet NaroNet Public

   Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifying subject types.

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2. NMF-RI NMF-RI Public

   Spectral unmixing of highly mixed multispectral flow and image cytometry data.

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3. Synplex Synplex Public

   Computer simulator of multiplex tissue images from a set of user-defined parameters

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4. PatchContrastiveLearning PatchContrastiveLearning Public

   A contrastive learning algorithm that encodes pixel information into enriched patch-level embeddings

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5. CellEmbeddings CellEmbeddings Public

   A fully unsupervised learning method that encodes cell phenotypes, morphologies, and cell-to-cell interactions from multiplex tissue images. For each cell, a contextual embedding is created.

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