Updated dependencies

README.md

@@ -21,7 +21,8 @@ pip install ontolearn
 or
 ```shell
 git clone https://github.com/dice-group/Ontolearn.git 
-conda create --name onto python=3.9.18 && conda activate onto && pip3 install -e . && python -c "import ontolearn"
+python -m venv venv && source venv/bin/activate # for Windows use: .\venv\Scripts\activate 
+pip install -r requirements.txt
 wget https://files.dice-research.org/projects/Ontolearn/KGs.zip -O ./KGs.zip && unzip KGs.zip
 ```
 ```shell
@@ -93,10 +94,11 @@ Fore more please refer to  the [examples](https://github.com/dice-group/Ontolear
 ## Deployment 
 
 ```shell
-pip install gradio
+pip install gradio # (check `pip show gradio` first)
 ```
 
-To deploy **EvoLearner** on the **Family** knowledge graph. Available models to deploy: **EvoLearner**, **NCES**, **CELOE** and **OCEL**.
+Available models to deploy: **EvoLearner**, **NCES**, **CELOE** and **OCEL**.
+To deploy **EvoLearner** on the **Family** knowledge graph:
 ```shell
 python deploy_cl.py --model evolearner --path_knowledge_base KGs/Family/family-benchmark_rich_background.owl
 ```

requirements.txt

@@ -1,18 +1,24 @@
-scikit-learn>=0.24.1
+scikit-learn>=1.0.2
 matplotlib>=3.3.4
-owlready2>=0.40
 torch>=1.7.1
 rdflib>=6.0.2
 pandas>=1.5.0
 sortedcontainers>=2.4.0
 flask>=1.1.2
 deap>=1.3.1
-httpx>=0.21.1
-parsimonious>=0.8.1
+httpx>=0.25.2
 tqdm>=4.64.0
-tokenizers>=0.12.1
-transformers>=4.19.2
-requests>=2.31.0
+transformers>=4.35.0
+owlready2>=0.41
 owlapy>=0.1.0
 dicee>=0.1.2
-pytest>=7.2.2
+flake8>=6.0.0
+sphinx>=7.2.6
+sphinx_rtd_theme>=2.0.0
+sphinxext-autox>=0.0.2
+sphinx-theme>=1.0
+sphinxcontrib-plantuml>=0.27
+plantuml-local-client>=1.2022.6
+myst-parser>=2.0.0
+pytest>=7.2.2
+build>=1.0.3

setup.py

@@ -17,11 +17,9 @@
         "sortedcontainers>=2.4.0",
         "flask>=1.1.2",
         "deap>=1.3.1",
-        "httpx>=0.21.1",
-        "parsimonious>=0.8.1",
+        "httpx>=0.25.2",
         "tqdm>=4.64.0",
-        "tokenizers>=0.12.1",
-        "transformers>=4.19.2",
+        "transformers>=4.35.0",
         "pytest>=7.2.2",
         "owlapy>=0.1.0",
         "dicee>=0.1.2"],