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1. Bovreproseq Bovreproseq Public

   Targeted amplicon sequencing for Bovine Reproductive Pathogens

   HTML

2. fastq_timesplit fastq_timesplit Public

   Shell script for splitting fastq file (oxford nanopore sequencing) based on time (in minutes)

   Shell

3. flye_ANI flye_ANI Public

   Pipeline for Whole genome Assembly using Dragonfle and ANI analysis using fastANI and ANIclustermap

   Nextflow

4. InfluenzaA_Typing InfluenzaA_Typing Public

   Pipeline for Influenza A Typing using Oxford Nanopore sequencing

   Shell 1

5. Mhaemolytica_WGS Mhaemolytica_WGS Public

   Pipeline for whole genome ssembly and analysis of Mannheimia haemolytica

   Nextflow 1

6. rename_folders rename_folders Public

   Pipeline for renaming barcode folders with sample names for Oxford sequencing data

   Shell