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Update table formatting in README
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dgault committed Dec 14, 2023
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Expand Up @@ -51,10 +51,12 @@ BF_CP=target/OMEZarrReader-with-dependencies.jar showinf -nopix your.ome.zarr/.z

## Reader specific options

The OMEZarrReader has a number of reader specific options which can be used to customise the reader behaviour. This options can be used in the same manner as the reader options for Bio-Formats outlined [here](https://bio-formats.readthedocs.io/en/latest/formats/options.html#usage). The list of available options are below:
The OMEZarrReader has a number of reader specific options which can be used to customise the reader behaviour. This options can be used in the same manner as the reader options for Bio-Formats outlined [here](https://bio-formats.readthedocs.io/en/latest/formats/options.html#usage).

The list of available options are below:

| Option | Default | Description |
| --- | --- |
| --- | --- | --- |
| `omezarr.quick_read` | false | Improves the read performance by limiting the number of files that are parsed. This assumes that the shape and resolution count of all images in a plate remains constant |
| `omezarr.save_annotations` | false | Determines if all the Zarr JSON metadata should be stored as XML annotations in the OME Model |
| `omezarr.list_pixels` | false | Used to decide if getUsedFiles should list all of the pixel chunks |
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