Ensure WellSampleIndex is used when comparing to OME-XML

dgault · Nov 3, 2023 · 6b1da51 · 6b1da51
1 parent 4357f54
commit 6b1da51
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/loci/formats/in/ZarrReader.java b/src/loci/formats/in/ZarrReader.java
@@ -983,8 +983,8 @@ private void parseOMEXML(Location omeMetaFile, MetadataStore store, ArrayList<St
         NonNegativeInteger row = omexmlMeta.getWellRow(plateIndex, wellIndex);
 
         String rowLetter = getRowString(row.getValue());
-        String expectedPath = rowLetter + File.separator + (col.getValue() + 1) + File.separator  + "0";
         for (int wellSampleIndex = 0; wellSampleIndex < omexmlMeta.getWellSampleCount(plateIndex, wellIndex); wellSampleIndex++) { 
+          String expectedPath = rowLetter + File.separator + (col.getValue() + 1) + File.separator  + wellSampleIndex;
           String imageRef = omexmlMeta.getWellSampleImageRef(plateIndex, wellIndex, wellSampleIndex);
           imageRefPaths.put(imageRef, expectedPath);
         }