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Sixteen novel lineages of SARS-CoV-2 in South Africa

Authors: Houriiyah Tegally1*, Eduan Wilkinson1*, Richard R Lessells1, Jennifer Giandhari1, Sureshnee Pillay1, Nokukhanya Msome2, Koleka Mlisana3, Jinal Bhiman4, Mushal Allam4, Susan Engelbrecht5, Gert Van Zyl5, Wolfgang Preiser5, Carolyn Willianson6, Diana Hardie6, Marvin Hsiao6, Darren Martin7, Denis York8, Domenique Goedhals9, Marta Giovanetti10, Jose Lourenco11, Emmanuel James San1, Luiz Carlos Junior Alcantara10,11 and Tulio de Oliveira1,12,13

*joint first authors Affiliations: 1KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa 2Discipline of Virology, University of KwaZulu-Natal, Durban, South Africa; 3National Health Laboratory Service, South Africa; 4National Institute For Communicable Diseases (NICD),Johannesburg, South Africa; 5Division of Medical Virology at NHLS Tygerberg Hospital, Stellenbosch University, South Africa; 6Division of Medical Virology at NHLS Groote Schuur Hospital, University of Cape Town, Cape Town, South Africa; 7The Computational Biology Division at The University of Cape Town, Cape Town, South Africa; 8Molecular Diagnostics Services, Durban, South Africa; 9Division of Virology at NHLS Universitas Academic Laboratories, University of The Free State, Bloemfontein, South Africa; 10Laboratorio de Flavivirus, Fundacao Oswaldo Cruz, Rio de Janeiro, Brazil, 11Department of Zoology, University of Oxford, Oxford, United Kingdom, 11Laboratorio de Genetica Celular e Molecular, ICB, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil; 12Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa; 13Department of Global Health, University of Washington, Seattle, USA.

Materials and Correspondence: Prof. Tulio de Oliveira - [email protected]

For further questions on data analysis, please contact Houriiyah - [email protected]

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