MNase filtering#1389

Merged

WardDeb merged 14 commits into4.0.0from

Apr 3, 2025

Commits on Feb 4, 2025

combine all filtering options in 1 struct, remove ignoreDups as an option
WardDeb
committed

Commits on Feb 5, 2025

Commits on Feb 7, 2025

drop bs1 - pileups in favor of records, to allow same filter strategy everywhere. Chunk big parts of chromosomes to keep memory within limits
WardDeb
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Commits on Feb 17, 2025

fix args conflict in bc2
WardDeb
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Commits on Mar 3, 2025

drop print statements
WardDeb
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Commits on Mar 5, 2025

Merge branch '4.0.0' of github.com:deeptools/deepTools into filtering
WardDeb
committed

Commits on Mar 6, 2025

Commits on Mar 20, 2025

separate filtering functionality into a separate mod. Simplify part of the covcalc
WardDeb
committed

Commits on Mar 31, 2025

proper offset implementation, non offsets encoded as (0,0)
WardDeb
committed

Commits on Apr 2, 2025

split up extendreads & extendreadslen
WardDeb
committed

Commits on Apr 3, 2025