ANOPA v0.1.1.

dcousin3 · Mar 17, 2024 · e8c2987 · e8c2987
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Showing 17 changed files with 29 additions and 31 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -9,7 +9,7 @@ Authors@R: c(
              person("Louis", "Laurencelle", email = "[email protected]",
                     role = c("aut", "ctb"))
            )
-Author: Denis Cousineau [aut, cre],
+Author: Denis Cousineau [aut, ctb, cre],
 		Louis Laurencelle [aut, ctb]
 Maintainer: Denis Cousineau <[email protected]>
 BugReports: https://github.com/dcousin3/ANOPA/issues/

diff --git a/R/ANOPA-plot.R b/R/ANOPA-plot.R
@@ -82,18 +82,18 @@
 #' anopaPlot(w, allowImputing = TRUE)
 #' 
 #' # We can place the factor `Diel` on the x-axis (first):
-#' anopaPlot(w, ~ Diel * Trophism * Location )
+#' #anopaPlot(w, ~ Diel * Trophism * Location )
 #' 
 #' # Change the style for a plot with bars instead of lines
-#' anopaPlot(w, plotStyle = "bar")
+#' #anopaPlot(w, plotStyle = "bar")   # to speed tests, we comment these two lines
 #' 
 #' # Changing the error bar style
-#' anopaPlot(w, plotStyle = "bar", errorbarParams = list( width =0.1, linewidth=0.1 ) )
+#' #anopaPlot(w, plotStyle = "bar", errorbarParams = list( width =0.1, linewidth=0.1 ) )
 #' 
 #' # Illustrating the main effect of Location (not interacting with other factors)
 #' # and the interaction Diel * Trophism separately
-#' anopaPlot(w, ~ Location )
-#' anopaPlot(w, ~ Diel * Trophism )
+#' #anopaPlot(w, ~ Location )        # to speed tests, we comment these two lines
+#' #anopaPlot(w, ~ Diel * Trophism ) # to speed tests, we comment these two lines
 #' 
 #' # All these plots are ggplot2 so they can be followed with additional directives, e.g.
 #' library(ggplot2)

diff --git a/R/ANOPA-posthocProportions.R b/R/ANOPA-posthocProportions.R
@@ -70,8 +70,7 @@
 #' # There is a near-significant interaction of Trophism * Diel (if we consider
 #' # the unadjusted p value, but you really should consider the adjusted p value...).
 #' # If you generate the plot of the four factors, we don't see much:
-#' anopaPlot(w)
-#'
+#' # anopaPlot(w)
 #' #... but with a plot specifically of the interaction helps:
 #' anopaPlot(w, ~ Trophism * Diel )
 #' # it seems that the most important difference is for omnivorous fishes

diff --git a/R/ArringtonEtAll2002.R b/R/ArringtonEtAll2002.R
@@ -25,7 +25,7 @@
 #' @references 
 #' \insertAllCited{}
 #'
-#' @source \doi{10.1890/0012-9658(2002)083}
+#' @source \doi{10.1890/0012-9658(2002)083[2145:HODFRO]2.0.CO;2}
 #'
 #' @examples
 #' 

diff --git a/docs/articles/D-ArringtonExample.html b/docs/articles/D-ArringtonExample.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -8,7 +8,7 @@ articles:
   D-ArringtonExample: D-ArringtonExample.html
   E-ArcsineIsAsinine: E-ArcsineIsAsinine.html
   F-TestingTypeIError: F-TestingTypeIError.html
-last_built: 2024-03-16T23:15Z
+last_built: 2024-03-17T00:27Z
 urls:
   reference: https://dcousin3.github.io/ANOPA/reference
   article: https://dcousin3.github.io/ANOPA/articles

diff --git a/docs/reference/ANOPA-package.html b/docs/reference/ANOPA-package.html
diff --git a/docs/reference/ArringtonEtAl2002.html b/docs/reference/ArringtonEtAl2002.html
diff --git a/docs/reference/anopaN2Power.html b/docs/reference/anopaN2Power.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/rBernoulli.html b/docs/reference/rBernoulli.html
diff --git a/docs/reference/unitaryAlpha.html b/docs/reference/unitaryAlpha.html
diff --git a/inst/REFERENCES.bib b/inst/REFERENCES.bib
@@ -100,7 +100,7 @@ @article{a02
   number  = {8},
   pages   = {2145--2151},
   year    = {2002},
-  doi     = {10.1890/0012-9658(2002)083}
+  doi     = {10.1890/0012-9658(2002)083[2145:HODFRO]2.0.CO;2}
 }
 
 @article{wh11,

diff --git a/man/ArringtonEtAl2002.Rd b/man/ArringtonEtAl2002.Rd
diff --git a/man/anopa_asn_trans1.Rd b/man/anopa_asn_trans1.Rd
diff --git a/man/posthocProportions.Rd b/man/posthocProportions.Rd