Merge remote-tracking branch 'upstream/main' into groupby-binary-ops-…

…lazy-array * upstream/main: (153 commits) Add HDF5 Section to read/write docs page (pydata#8012) [pre-commit.ci] pre-commit autoupdate (pydata#8014) Update interpolate_na in dataset.py (pydata#7974) improved docstring of to_netcdf (issue pydata#7127) (pydata#7947) Expose "Coordinates" as part of Xarray's public API (pydata#7368) Core team member guide (pydata#7999) join together duplicate entries in the text `repr` (pydata#7225) Update copyright year in README (pydata#8007) Allow opening datasets with nD dimenson coordinate variables. (pydata#7989) Move whats-new entry [pre-commit.ci] pre-commit autoupdate (pydata#7997) Add documentation on custom indexes (pydata#6975) Use variable name in all exceptions raised in `as_variable` (pydata#7995) Bump pypa/gh-action-pypi-publish from 1.8.7 to 1.8.8 (pydata#7994) New whatsnew section Remove future release notes before this release Update whats-new.rst for new release (pydata#7993) Remove hue_style from plot1d docstring (pydata#7925) Add new what's new section (pydata#7986) Release summary for v2023.07.0 (pydata#7979) ...
dcherian · Jul 24, 2023 · 3bb998e · 3bb998e
2 parents f4b771f + 88315fd
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diff --git a/.github/config.yml b/.github/config.yml
@@ -0,0 +1,23 @@
+# Comment to be posted to on first time issues
+newIssueWelcomeComment: >
+  Thanks for opening your first issue here at xarray! Be sure to follow the issue template!
+
+  If you have an idea for a solution, we would really welcome a Pull Request with proposed changes.
+
+  See the [Contributing Guide](https://docs.xarray.dev/en/latest/contributing.html) for more.
+
+  It may take us a while to respond here, but we really value your contribution. Contributors like you help make xarray better.
+
+  Thank you!
+
+# Comment to be posted to on PRs from first time contributors in your repository
+newPRWelcomeComment: >
+  Thank you for opening this pull request! It may take us a few days to respond here, so thank you for being patient.
+
+  If you have questions, some answers may be found in our [contributing guidelines](http://docs.xarray.dev/en/stable/contributing.html).
+
+# Comment to be posted to on pull requests merged by a first time user
+firstPRMergeComment: >
+  Congratulations on completing your first pull request! Welcome to Xarray!
+  We are proud of you, and hope to see you again!
+  ![celebration gif](https://media.giphy.com/media/umYMU8G2ixG5mJBDo5/giphy.gif)
diff --git a/.github/workflows/benchmarks-last-release.yml b/.github/workflows/benchmarks-last-release.yml
@@ -0,0 +1,79 @@
+name: Benchmark compare last release
+
+on:
+  push:
+    branches:
+      - main
+  workflow_dispatch:
+
+jobs:
+  benchmark:
+    name: Linux
+    runs-on: ubuntu-20.04
+    env:
+      ASV_DIR: "./asv_bench"
+      CONDA_ENV_FILE: ci/requirements/environment.yml
+
+    steps:
+      # We need the full repo to avoid this issue
+      # https://github.com/actions/checkout/issues/23
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Set up conda environment
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: ${{env.CONDA_ENV_FILE}}
+          environment-name: xarray-tests
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}-benchmark"
+          create-args: >-
+            asv
+
+      - name: 'Get Previous tag'
+        id: previoustag
+        uses: "WyriHaximus/github-action-get-previous-tag@v1"
+        # with:
+        #   fallback: 1.0.0 # Optional fallback tag to use when no tag can be found
+
+      - name: Run benchmarks
+        shell: bash -l {0}
+        id: benchmark
+        env:
+          OPENBLAS_NUM_THREADS: 1
+          MKL_NUM_THREADS: 1
+          OMP_NUM_THREADS: 1
+          ASV_FACTOR: 1.5
+          ASV_SKIP_SLOW: 1
+        run: |
+          set -x
+          # ID this runner
+          asv machine --yes
+          echo "Baseline: ${{ steps.previoustag.outputs.tag }} "
+          echo "Contender: ${{ github.sha }}"
+          # Use mamba for env creation
+          # export CONDA_EXE=$(which mamba)
+          export CONDA_EXE=$(which conda)
+          # Run benchmarks for current commit against base
+          ASV_OPTIONS="--split --show-stderr --factor $ASV_FACTOR"
+          asv continuous $ASV_OPTIONS ${{ steps.previoustag.outputs.tag }}  ${{ github.sha }} \
+              | sed "/Traceback \|failed$\|PERFORMANCE DECREASED/ s/^/::error::/" \
+              | tee benchmarks.log
+          # Report and export results for subsequent steps
+          if grep "Traceback \|failed\|PERFORMANCE DECREASED" benchmarks.log > /dev/null ; then
+              exit 1
+          fi
+        working-directory: ${{ env.ASV_DIR }}
+
+      - name: Add instructions to artifact
+        if: always()
+        run: |
+          cp benchmarks/README_CI.md benchmarks.log .asv/results/
+        working-directory: ${{ env.ASV_DIR }}
+
+      - uses: actions/upload-artifact@v3
+        if: always()
+        with:
+          name: asv-benchmark-results-${{ runner.os }}
+          path: ${{ env.ASV_DIR }}/.asv/results
diff --git a/.github/workflows/benchmarks.yml b/.github/workflows/benchmarks.yml
@@ -22,13 +22,13 @@ jobs:
           fetch-depth: 0
 
       - name: Set up conda environment
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ${{env.CONDA_ENV_FILE}}
           environment-name: xarray-tests
-          cache-env: true
-          cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}-benchmark"
-          extra-specs: |
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}-benchmark"
+          create-args: >-
             asv
 
 

diff --git a/.github/workflows/ci-additional.yaml b/.github/workflows/ci-additional.yaml
@@ -53,15 +53,15 @@ jobs:
           echo "TODAY=$(date  +'%Y-%m-%d')" >> $GITHUB_ENV
 
       - name: Setup micromamba
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ${{env.CONDA_ENV_FILE}}
           environment-name: xarray-tests
-          extra-specs: |
+          create-args: >-
             python=${{env.PYTHON_VERSION}}
             conda
-          cache-env: true
-          cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
 
       - name: Install xarray
         run: |
@@ -100,15 +100,15 @@ jobs:
         run: |
           echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
       - name: Setup micromamba
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ${{env.CONDA_ENV_FILE}}
           environment-name: xarray-tests
-          extra-specs: |
+          create-args: >-
             python=${{env.PYTHON_VERSION}}
             conda
-          cache-env: true
-          cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
       - name: Install xarray
         run: |
           python -m pip install --no-deps -e .
@@ -119,14 +119,14 @@ jobs:
           python xarray/util/print_versions.py
       - name: Install mypy
         run: |
-          python -m pip install 'mypy<0.990'
+          python -m pip install mypy --force-reinstall
 
       - name: Run mypy
         run: |
           python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report
 
       - name: Upload mypy coverage to Codecov
-        uses: codecov/[email protected].1
+        uses: codecov/[email protected].4
         with:
           file: mypy_report/cobertura.xml
           flags: mypy
@@ -154,15 +154,15 @@ jobs:
         run: |
           echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
       - name: Setup micromamba
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ${{env.CONDA_ENV_FILE}}
           environment-name: xarray-tests
-          extra-specs: |
+          create-args: >-
             python=${{env.PYTHON_VERSION}}
             conda
-          cache-env: true
-          cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
       - name: Install xarray
         run: |
           python -m pip install --no-deps -e .
@@ -173,14 +173,14 @@ jobs:
           python xarray/util/print_versions.py
       - name: Install mypy
         run: |
-          python -m pip install 'mypy<0.990'
+          python -m pip install mypy --force-reinstall
 
       - name: Run mypy
         run: |
           python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report
 
       - name: Upload mypy coverage to Codecov
-        uses: codecov/[email protected].1
+        uses: codecov/[email protected].4
         with:
           file: mypy_report/cobertura.xml
           flags: mypy39
@@ -210,16 +210,14 @@ jobs:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
       - name: Setup micromamba
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-name: xarray-tests
-          environment-file: false
-          extra-specs: |
+          create-args: >-
             python=3.10
             pyyaml
             conda
             python-dateutil
-          channels: conda-forge
 
       - name: minimum versions policy
         run: |

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -92,13 +92,13 @@ jobs:
           echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV
 
       - name: Setup micromamba
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ${{ env.CONDA_ENV_FILE }}
           environment-name: xarray-tests
-          cache-env: true
-          cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
-          extra-specs: |
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+          create-args: >-
             python=${{matrix.python-version}}
             conda
 
@@ -139,7 +139,7 @@ jobs:
           path: pytest.xml
 
       - name: Upload code coverage to Codecov
-        uses: codecov/[email protected].1
+        uses: codecov/[email protected].4
         with:
           file: ./coverage.xml
           flags: unittests

diff --git a/.github/workflows/nightly-wheels.yml b/.github/workflows/nightly-wheels.yml
@@ -0,0 +1,44 @@
+name: Upload nightly wheels
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: "0 0 * * *"
+jobs:
+  cron:
+    runs-on: ubuntu-latest
+    if: github.repository == 'pydata/xarray'
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install build twine
+
+      - name: Build tarball and wheels
+        run: |
+          git clean -xdf
+          git restore -SW .
+          python -m build
+
+      - name: Check built artifacts
+        run: |
+          python -m twine check --strict dist/*
+          pwd
+          if [ -f dist/xarray-0.0.0.tar.gz ]; then
+              echo "❌ INVALID VERSION NUMBER"
+              exit 1
+          else
+              echo "✅ Looks good"
+          fi
+
+      - name: Upload wheel
+        uses: scientific-python/upload-nightly-action@main
+        with:
+          anaconda_nightly_upload_token: ${{ secrets.ANACONDA_NIGHTLY }}
+          artifacts_path: dist