Test-time augmentation #33
Workflow file for this run
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| name: Build macOS ARM | |
| on: | |
| push: | |
| branches: [master,update] | |
| pull_request: | |
| branches: [master, release] | |
| workflow_dispatch: | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: 11.0 | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: macos-14 | |
| TARGET: macos | |
| CMD_BUILD: python setup.py bdist_wheel --plat-name macosx_11_0_arm64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: arch -arm64 brew reinstall zlib | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: python -m pip install wheel | |
| - name: Build the wheel for ${{matrix.TARGET}} | |
| run: ${{matrix.CMD_BUILD}} | |
| - name: Upload Python wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Python wheel | |
| path: ${{github.workspace}}/dist/raidionicsseg-*.whl | |
| if-no-files-found: error | |
| test: | |
| needs: build | |
| strategy: | |
| matrix: | |
| os: [macos-14] | |
| python-version: ["3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: "Python wheel" | |
| - name: Install wheel | |
| run: pip install --upgrade pip | |
| pip install --default-timeout=100 --find-links=${{github.workspace}} --force-reinstall raidionicsseg-* | |
| shell: bash | |
| - name: Test CLI | |
| run: python -m raidionicsseg --help | |
| - name: Clone repo | |
| uses: actions/checkout@v4 | |
| - name: Inference unit test with TensorFlow model | |
| run: cd ${{github.workspace}}/tests && python inference_test.py | |
| - name: Inference unit test with PyTorch model | |
| run: cd ${{github.workspace}}/tests && python inference_test_torch_model.py | |
| - name: Inference unit test with test-time augmentation | |
| run: cd ${{github.workspace}}/tests && python inference_test_time_augmentation.py | |
| # - name: Test with pytest | |
| # run: | | |
| # pip install pytest | |
| # pytest --verbose tests/ |