R package to calculate generation interval distributions and fit epidemiological models to contact tracing data.
See [1] for theoretical framework.
To install:
- if necessary:
install.packages(devtools) library(devtools) ; install_github("davidchampredon/GI", build_vignettes = TRUE, force=TRUE)
Vignette: vignette("GI-vignette")
Reference:
[1] Champredon D, Dushoff J. Intrinsic and realized generation intervals in infectious-disease transmission. Proceedings of the Royal Society B: Biological Sciences 2015; 282: 20152026.