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Revise Allen notebook 6 - read only sbxreader memmap requirement
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@@ -514,7 +514,7 @@ | |
" 'h5py_key': 'data',\n", | ||
" 'save_path0': [],\n", | ||
" 'subfolders': [],\n", | ||
" 'nplanes': 1,\n", | ||
" 'nplanes': 4,\n", | ||
" 'nchannels': 1,\n", | ||
" 'functional_chan': 1,\n", | ||
" 'tau': 1.0,\n", | ||
|
@@ -630,9 +630,7 @@ | |
"id": "637b9ec1", | ||
"metadata": {}, | ||
"source": [ | ||
"If you have write access to the data, you can then run Suite2p for the new parameter set and save the results to the respective tables.\n", | ||
"\n", | ||
"**Note:** CodeBook does not yet support write access for shared datasets. To see Suite2p triggering in action, contact [email protected] to find out how to upload your own data." | ||
"You can then run Suite2p for the new parameter set and save the results to the respective tables. For this dataset (4 channels, 4 depths, 7.5k frames), this may take several hours." | ||
] | ||
}, | ||
{ | ||
|
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@@ -237,7 +237,7 @@ | |
'h5py_key': 'data', | ||
'save_path0': [], | ||
'subfolders': [], | ||
'nplanes': 1, | ||
'nplanes': 4, | ||
'nchannels': 1, | ||
'functional_chan': 1, | ||
'tau': 1.0, | ||
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@@ -317,9 +317,7 @@ | |
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imaging.ProcessingTask() | ||
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# If you have write access to the data, you can then run Suite2p for the new parameter set and save the results to the respective tables. | ||
# | ||
# **Note:** CodeBook does not yet support write access for shared datasets. To see Suite2p triggering in action, contact [email protected] to find out how to upload your own data. | ||
# You can then run Suite2p for the new parameter set and save the results to the respective tables. For this dataset (4 channels, 4 depths, 7.5k frames), this may take several hours. | ||
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# + | ||
populate_settings = dict(display_progress=True) | ||
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