Merge pull request #143 from kabilar/main

Update version and changelog for release

.github/workflows/u24_element_release_call.yml

@@ -17,7 +17,6 @@ jobs:
     secrets:
       TWINE_USERNAME: ${{secrets.TWINE_TEST_USERNAME}}
       TWINE_PASSWORD: ${{secrets.TWINE_TEST_PASSWORD}}
-      GOOGLE_ANALYTICS_KEY: ${{secrets.GOOGLE_ANALYTICS_KEY}}
   call_u24_elements_release_alpine:
     if: >-
       github.event.workflow_run.conclusion == 'success' && github.repository_owner == 'datajoint' && !contains(github.event.workflow_run.head_branch, 'test')
@@ -27,5 +26,4 @@ jobs:
     secrets:
       TWINE_USERNAME: ${{secrets.TWINE_USERNAME}}
       TWINE_PASSWORD: ${{secrets.TWINE_PASSWORD}}
-      GOOGLE_ANALYTICS_KEY: ${{secrets.GOOGLE_ANALYTICS_KEY}}
 

CHANGELOG.md

@@ -3,6 +3,10 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
  [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.2.6] - 2023-04-17
+
++ Fix - Update Pandas DataFrame column name to insert `pt_ratio` in `QualityMetrics.Waveform` table
+
 ## [0.2.5] - 2023-04-12
 
 + Add - docstrings for quality metric tables
@@ -97,6 +101,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS,
   2.0 - MS
 
+[0.2.6]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.6
 [0.2.5]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.5
 [0.2.4]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.4
 [0.2.3]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.3

docs/docker-compose.yaml

@@ -14,7 +14,6 @@ services:
       - PACKAGE
       - UPSTREAM_REPO
       - MODE
-      - GOOGLE_ANALYTICS_KEY
       - PATCH_VERSION
     volumes:
       - ../docs:/main/docs

docs/mkdocs.yaml

@@ -55,17 +55,14 @@ nav:
 #     UPSTREAM_REPO=https://github.com/datajoint/element-{ELEMENT}.git \
 #     HOST_UID=$(id -u) docker compose -f docs/docker-compose.yaml up --build
 #     ```
-# 02. Site analytics depend on a local environment variable GOOGLE_ANALYTICS_KEY
-#     You can find this in LastPass or declare with any string to suppress errors
-# 03. The API section will pull docstrings.
-#     A. Follow google style guide e.g.,
+# 02. The API section will pull docstrings.
+#     A. Follow google style guide e.g., 
 #        https://sphinxcontrib-napoleon.readthedocs.io/en/latest/example_google.html
 #        With typing suggestions: https://docs.python.org/3/library/typing.html
 #     B. To pull a specific workflow fork, change ./docs/src/api/make_pages.py#L19
-# 04. To see your fork of the workflow-{element} in this render, change the
+# 03. To see your fork of the workflow-{element} in this render, change the
 #     URL in ./docs/src/api/make_pages.py#L19 to your fork.
-# 05. For redirecting options For redirect options, see 'redirects' below.
-# 06. To deploy this site on your fork,
+# 04. To deploy this site on your fork, 
 #     A. declare a branch called gh-pages
 #     B. go to the your fork > settings > pages
 #     C. direct pages to render from the gh-pages branch at root
@@ -142,13 +139,12 @@ markdown_extensions:
   - pymdownx.inlinehilite
   - pymdownx.snippets
   - footnotes
-
+  - pymdownx.magiclink # Displays bare URLs as links
+  - pymdownx.tasklist: # Renders check boxes in tasks lists
+      custom_checkbox: true
 extra:
   PATCH_VERSION: !ENV PATCH_VERSION
   generator: false # Disable watermark
-  analytics:
-    provider: google
-    property: !ENV GOOGLE_ANALYTICS_KEY
   version:
     provider: mike
   social:

docs/src/concepts.md

@@ -168,7 +168,7 @@ Tables for storing probe or unit-level visualization results.
 
 Through our interviews and direct collaboration on the precursor projects, we identified
 the common motifs to create the 
-[Array ElectrophysiologyElement](https://github.com/datajoint/element-array-ephys).
+[Array Electrophysiology Element](https://github.com/datajoint/element-array-ephys).
 
 Major features of the Array Electrophysiology Element include:
 

element_array_ephys/ephys_precluster.py

@@ -1276,6 +1276,8 @@ def make(self, key):
 
         metrics_df = pd.read_csv(metric_fp)
         metrics_df.set_index("cluster_id", inplace=True)
+        metrics_df.replace([np.inf, -np.inf], np.nan, inplace=True)
+        metrics_df.columns = metrics_df.columns.str.lower()
 
         metrics_list = [
             dict(metrics_df.loc[unit_key["unit"]], **unit_key)

element_array_ephys/version.py

@@ -1,2 +1,2 @@
 """Package metadata."""
-__version__ = "0.2.5"
+__version__ = "0.2.6"