Merge pull request #51 from bernardosabatinilab/dev #1
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| name: build | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main"] | |
| workflow_dispatch: | |
| inputs: | |
| name: | |
| description: 'description' | |
| required: false | |
| default: '' | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| name: ${{ matrix.platform }}, py${{ matrix.python-version }}, ${{ matrix.extra }}, ${{ matrix.install-level }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ | |
| # ubuntu-latest, | |
| # ubuntu-22.04, | |
| ubuntu-20.04, | |
| # # windows-latest, | |
| windows-2022, | |
| windows-2019, | |
| macos-latest, | |
| #macos-12.0, | |
| macos-11.0, | |
| # macos-10.15, | |
| ] | |
| python-version: [ | |
| "3.9", | |
| # "3.10", | |
| # "3.11", | |
| # "3.12", | |
| ] | |
| extra: [ | |
| "all", | |
| ] | |
| install-level: [ | |
| system, | |
| user, | |
| ] | |
| steps: | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: latest | |
| activate-environment: sabatini-datajoint | |
| auto-activate-base: true | |
| auto-update-conda: true | |
| remove-profiles: true | |
| architecture: x64 | |
| clean-patched-environment-file: true | |
| run-post: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Prepare PowerShell | |
| shell: pwsh | |
| run: | | |
| conda info | |
| conda list | |
| - name: Check specs of the machine -- Linux | |
| if: startsWith(matrix.platform, 'ubuntu') | |
| run: | | |
| ## check cpu, memory, disk, etc. | |
| ## print the command inputs to the workflow | |
| echo "CPU info (lscpu):" | |
| lscpu | |
| echo "Memory info (free -h):" | |
| free -h | |
| echo "Disk info (df -h):" | |
| df -h | |
| echo "Network info (ip a):" | |
| ip a | |
| echo "OS info (uname -a):" | |
| uname -a | |
| - name: Check specs of the machine -- Windows | |
| if: startsWith(matrix.platform, 'windows') | |
| run: | | |
| ## check cpu, memory, disk, etc. | |
| ## just do a generic check on system info | |
| ## print the command inputs to the workflow | |
| echo "System info (systeminfo):" | |
| systeminfo | |
| - name: Check specs of the machine -- MacOS | |
| if: startsWith(matrix.platform, 'macos') | |
| run: | | |
| ## check cpu, memory, disk, etc. | |
| ## print the command inputs to the workflow | |
| echo "CPU info (sysctl -n machdep.cpu.brand_string):" | |
| sysctl -n machdep.cpu.brand_string | |
| echo "Memory info (sysctl -n hw.memsize):" | |
| sysctl -n hw.memsize | |
| echo "Disk info (df -h):" | |
| df -h | |
| echo "OS info (uname -a):" | |
| uname -a | |
| - name: Install sabatini-datajoint with pip dependencies -- system-level | |
| if: matrix.install-level == 'system' | |
| run: | | |
| ## install dependencies with optional extras | |
| pip install -e .[${{ matrix.extra }}] | |
| - name: Install sabatini-datajoint with pip dependencies -- user-level | |
| if: matrix.install-level == 'user' | |
| run: | | |
| pip install -e .[${{ matrix.extra }}] --user | |
| - name: Check installed packages | |
| run: | | |
| pip list | |
| conda list | |
| - name: Run pytest | |
| run: | | |
| pip install pytest | |
| python -m pytest --capture=tee-sys |