Refactor module names to avoid function/module name clashes

- Renamed:
  - `clone.py`       → `repository_clone.py`
  - `ingest.py`      → `repository_ingest.py`
  - `ingest_from_query.py` → `query_ingestion.py`
  - `parse_query.py` → `query_parser.py`
- Updated import statements accordingly in package `__init__.py`

src/gitingest/__init__.py

@@ -1,8 +1,8 @@
 """ Gitingest: A package for ingesting data from git repositories. """
 
-from gitingest.clone import clone_repo
-from gitingest.ingest import ingest
-from gitingest.ingest_from_query import ingest_from_query
-from gitingest.parse_query import parse_query
+from gitingest.query_ingestion import ingest_from_query
+from gitingest.query_parser import parse_query
+from gitingest.repository_clone import clone_repo
+from gitingest.repository_ingest import ingest
 
 __all__ = ["ingest_from_query", "clone_repo", "parse_query", "ingest"]

src/gitingest/cli.py

@@ -4,8 +4,8 @@
 
 import click
 
-from gitingest.ingest import ingest
-from gitingest.ingest_from_query import MAX_FILE_SIZE
+from gitingest.query_ingestion import MAX_FILE_SIZE
+from gitingest.repository_ingest import ingest
 
 
 @click.command()

src/gitingest/ingest.py → src/gitingest/repository_ingest.py

@@ -5,9 +5,9 @@
 import shutil
 
 from config import TMP_BASE_PATH
-from gitingest.clone import CloneConfig, clone_repo
-from gitingest.ingest_from_query import ingest_from_query
-from gitingest.parse_query import parse_query
+from gitingest.query_ingestion import ingest_from_query
+from gitingest.query_parser import parse_query
+from gitingest.repository_clone import CloneConfig, clone_repo
 
 
 def ingest(

src/process_query.py

@@ -7,9 +7,9 @@
 from starlette.templating import _TemplateResponse
 
 from config import EXAMPLE_REPOS, MAX_DISPLAY_SIZE
-from gitingest.clone import CloneConfig, clone_repo
-from gitingest.ingest_from_query import ingest_from_query
-from gitingest.parse_query import parse_query
+from gitingest.query_ingestion import ingest_from_query
+from gitingest.query_parser import parse_query
+from gitingest.repository_clone import CloneConfig, clone_repo
 from server_utils import Colors, log_slider_to_size
 
 templates = Jinja2Templates(directory="templates")

tests/test_clone.py

@@ -1,10 +1,10 @@
-""" Tests for the clone module. """
+""" Tests for the repository_clone module. """
 
 from unittest.mock import AsyncMock, patch
 
 import pytest
 
-from gitingest.clone import CloneConfig, _check_repo_exists, clone_repo
+from gitingest.repository_clone import CloneConfig, _check_repo_exists, clone_repo
 
 
 @pytest.mark.asyncio
@@ -20,8 +20,8 @@ async def test_clone_repo_with_commit() -> None:
         branch="main",
     )
 
-    with patch("gitingest.clone._check_repo_exists", return_value=True) as mock_check:
-        with patch("gitingest.clone._run_git_command", new_callable=AsyncMock) as mock_exec:
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=True) as mock_check:
+        with patch("gitingest.repository_clone._run_git_command", new_callable=AsyncMock) as mock_exec:
             mock_process = AsyncMock()
             mock_process.communicate.return_value = (b"output", b"error")
             mock_exec.return_value = mock_process
@@ -38,8 +38,8 @@ async def test_clone_repo_without_commit() -> None:
     """
     query = CloneConfig(url="https://github.com/user/repo", local_path="/tmp/repo", commit=None, branch="main")
 
-    with patch("gitingest.clone._check_repo_exists", return_value=True) as mock_check:
-        with patch("gitingest.clone._run_git_command", new_callable=AsyncMock) as mock_exec:
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=True) as mock_check:
+        with patch("gitingest.repository_clone._run_git_command", new_callable=AsyncMock) as mock_exec:
             mock_process = AsyncMock()
             mock_process.communicate.return_value = (b"output", b"error")
             mock_exec.return_value = mock_process
@@ -61,7 +61,7 @@ async def test_clone_repo_nonexistent_repository() -> None:
         commit=None,
         branch="main",
     )
-    with patch("gitingest.clone._check_repo_exists", return_value=False) as mock_check:
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=False) as mock_check:
         with pytest.raises(ValueError, match="Repository not found"):
             await clone_repo(clone_config)
             mock_check.assert_called_once_with(clone_config.url)
@@ -133,8 +133,8 @@ async def test_clone_repo_with_custom_branch() -> None:
         local_path="/tmp/repo",
         branch="feature-branch",
     )
-    with patch("gitingest.clone._check_repo_exists", return_value=True):
-        with patch("gitingest.clone._run_git_command", new_callable=AsyncMock) as mock_exec:
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=True):
+        with patch("gitingest.repository_clone._run_git_command", new_callable=AsyncMock) as mock_exec:
             await clone_repo(clone_config)
             mock_exec.assert_called_once_with(
                 "git",
@@ -158,8 +158,8 @@ async def test_git_command_failure() -> None:
         url="https://github.com/user/repo",
         local_path="/tmp/repo",
     )
-    with patch("gitingest.clone._check_repo_exists", return_value=True):
-        with patch("gitingest.clone._run_git_command", side_effect=RuntimeError("Git command failed")):
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=True):
+        with patch("gitingest.repository_clone._run_git_command", side_effect=RuntimeError("Git command failed")):
             with pytest.raises(RuntimeError, match="Git command failed"):
                 await clone_repo(clone_config)
 
@@ -174,8 +174,8 @@ async def test_clone_repo_default_shallow_clone() -> None:
         url="https://github.com/user/repo",
         local_path="/tmp/repo",
     )
-    with patch("gitingest.clone._check_repo_exists", return_value=True):
-        with patch("gitingest.clone._run_git_command", new_callable=AsyncMock) as mock_exec:
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=True):
+        with patch("gitingest.repository_clone._run_git_command", new_callable=AsyncMock) as mock_exec:
             await clone_repo(clone_config)
             mock_exec.assert_called_once_with(
                 "git", "clone", "--depth=1", "--single-branch", clone_config.url, clone_config.local_path
@@ -193,8 +193,8 @@ async def test_clone_repo_commit_without_branch() -> None:
         local_path="/tmp/repo",
         commit="a" * 40,  # Simulating a valid commit hash
     )
-    with patch("gitingest.clone._check_repo_exists", return_value=True):
-        with patch("gitingest.clone._run_git_command", new_callable=AsyncMock) as mock_exec:
+    with patch("gitingest.repository_clone._check_repo_exists", return_value=True):
+        with patch("gitingest.repository_clone._run_git_command", new_callable=AsyncMock) as mock_exec:
             await clone_repo(clone_config)
             assert mock_exec.call_count == 2  # Clone and checkout calls
             mock_exec.assert_any_call("git", "clone", "--single-branch", clone_config.url, clone_config.local_path)

tests/test_ingest.py

@@ -1,9 +1,9 @@
-""" Tests for the ingest_from_query module """
+""" Tests for the query_ingestion module """
 
 from pathlib import Path
 from typing import Any
 
-from gitingest.ingest_from_query import _extract_files_content, _scan_directory
+from gitingest.query_ingestion import _extract_files_content, _scan_directory
 
 
 def test_scan_directory(temp_directory: Path, sample_query: dict[str, Any]) -> None:

tests/test_parse_query.py

@@ -1,11 +1,11 @@
-""" Tests for the parse_query module. """
+""" Tests for the query_parser module. """
 
 from pathlib import Path
 
 import pytest
 
 from gitingest.ignore_patterns import DEFAULT_IGNORE_PATTERNS
-from gitingest.parse_query import _parse_patterns, _parse_url, parse_query
+from gitingest.query_parser import _parse_patterns, _parse_url, parse_query
 
 
 def test_parse_url_valid_https() -> None: