[wip] skip pde nyc as it crashes

publication/script/install_dependencies.sh

@@ -0,0 +1,45 @@
+#!/bin/bash
+
+# Update package lists
+echo "Updating package lists..."
+sudo apt-get update
+
+# Install Clang++
+echo "Installing Clang++..."
+sudo apt-get install -y clang
+
+# Install CMake (version 3.22 or higher)
+echo "Installing CMake..."
+sudo apt-get install -y software-properties-common
+sudo apt-add-repository -y ppa:ubuntu-toolchain-r/test
+sudo apt-get update
+sudo apt-get install -y cmake
+
+# Install Boost
+echo "Installing Boost..."
+sudo apt-get install -y libboost-all-dev
+
+# Install BZIP2
+echo "Installing BZIP2..."
+sudo apt-get install -y libbz2-dev
+
+# Install OpenSSL
+echo "Installing OpenSSL..."
+sudo apt-get install -y libssl-dev
+
+# Install libcurl
+echo "Installing libcurl..."
+sudo apt-get install -y libcurl4-openssl-dev
+
+# Install g++
+echo "Installing g++..."
+sudo apt-get install -y g++
+
+# Install Python dependencies directly
+echo "Installing Python dependencies in the system-wide Python environment..."
+sudo apt-get install -y python3-pip
+pip3 install --upgrade pip --break-system-packages
+pip3 install pandas seaborn --break-system-packages
+
+# Final check
+echo "All dependencies installed successfully! Python dependencies are installed system-wide."

publication/script/run_end_to_end.sh

@@ -21,8 +21,15 @@ for scheme in "${schemes[@]}"; do
   for query in "${queries[@]}"; do
     for thread in "${threads[@]}"; do
       for dataset in "${datasets[@]}"; do
+        # Skip specific combination
+        if [[ "$scheme" == "pde" && "$dataset" == "nyc29" ]]; then
+          echo "Skipping combination: scheme='$scheme', dataset='$dataset'."
+          continue
+        fi
+
         # Execute the command
         "$CLONED_DIR/build/publication/source_code/bench_end_to_end/run_query" "$thread" "$query" "$scheme" "$dataset"
+
         # Check for errors
         if [ $? -ne 0 ]; then
           echo "Error: Command failed for dataset='$dataset', scheme='$scheme', query='$query', thread='$thread'."
@@ -32,4 +39,3 @@ for scheme in "${schemes[@]}"; do
     done
   done
 done
-