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release v0.12.0
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kikkomep committed Jan 12, 2024
2 parents 3bb40b3 + a28c2b0 commit 78008bb
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2 changes: 1 addition & 1 deletion LICENSE
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MIT License

Copyright (c) 2020-2022 CRS4
Copyright (c) 2020-2024 CRS4

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion app.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion cli/admin.py
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#!/usr/bin/env python3

# Copyright (c) 2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion cli/client/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion cli/client/issues.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion cli/client/main.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion cli/client/utils.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion examples/get_workflow.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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19 changes: 19 additions & 0 deletions gunicorn.conf.py
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# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.

import os
import sys
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion interaction_experiments/check_cwl.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion interaction_experiments/check_galaxy.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion k8s/Chart.yaml
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# This is the version number of the application being deployed. This version number should be
# incremented each time you make changes to the application. Versions are not expected to
# follow Semantic Versioning. They should reflect the version the application is using.
appVersion: 0.11.9
appVersion: 0.12.0

# Chart dependencies
dependencies:
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2 changes: 1 addition & 1 deletion lifemonitor/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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20 changes: 20 additions & 0 deletions lifemonitor/_version.py
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# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.

# This file helps to compute a version number in source trees obtained from
# git-archive tarball (such as those provided by githubs download-from-tag
# feature). Distribution tarballs (built by setup.py sdist) and build
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2 changes: 1 addition & 1 deletion lifemonitor/api/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/controllers.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/issues/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/issues/general/experimental.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/issues/general/lm.py
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# Copyright (c) 2020-2021 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/issues/general/metadata.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/issues/general/repo_layout.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/notifications.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/registries/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/registries/forms.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/registries/registry.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/registries/seek.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/registries/settings.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/base.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/config.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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19 changes: 19 additions & 0 deletions lifemonitor/api/models/repositories/files/__init__.py
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# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.

from .base import RepositoryFile
from .templates import TemplateRepositoryFile
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/files/base.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/files/templates.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/github.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/local.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/templates/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/templates/galaxy.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/templates/nextflow.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/repositories/templates/snakemake.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/rocrate/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/rocrate/generators.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/services/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/services/github.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/services/jenkins.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/services/service.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/services/travis.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/status.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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2 changes: 1 addition & 1 deletion lifemonitor/api/models/testsuites/__init__.py
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# Copyright (c) 2020-2022 CRS4
# Copyright (c) 2020-2024 CRS4
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
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