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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,77 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname MSTest | ||
| %global packver 0.1.2 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.2 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Hypothesis Testing for Markov Switching Models | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.0.0 | ||
| Requires: R-core >= 4.0.0 | ||
| BuildRequires: R-CRAN-Rcpp >= 1.0.1 | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-nloptr | ||
| BuildRequires: R-CRAN-numDeriv | ||
| BuildRequires: R-CRAN-pracma | ||
| BuildRequires: R-CRAN-foreach | ||
| BuildRequires: R-CRAN-GenSA | ||
| BuildRequires: R-CRAN-pso | ||
| BuildRequires: R-CRAN-GA | ||
| BuildRequires: R-graphics | ||
| BuildRequires: R-CRAN-RcppArmadillo | ||
| Requires: R-CRAN-Rcpp >= 1.0.1 | ||
| Requires: R-stats | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-nloptr | ||
| Requires: R-CRAN-numDeriv | ||
| Requires: R-CRAN-pracma | ||
| Requires: R-CRAN-foreach | ||
| Requires: R-CRAN-GenSA | ||
| Requires: R-CRAN-pso | ||
| Requires: R-CRAN-GA | ||
| Requires: R-graphics | ||
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| %description | ||
| Implementation of hypothesis testing procedures described in Hansen (1992) | ||
| <doi:10.1002/jae.3950070506>, Carrasco, Hu, & Ploberger (2014) | ||
| <doi:10.3982/ECTA8609>, Dufour & Luger (2017) | ||
| <doi:10.1080/07474938.2017.1307548>, and Rodriguez Rondon & Dufour (2022) | ||
| <https://grodriguezrondon.com/files/RodriguezRondon_Dufour_MonteCarlo_LikelihoodRatioTest_MarkovSwitchingModels.pdf> | ||
| that can be used to identify the number of regimes in Markov switching | ||
| models. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,65 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname QGA | ||
| %global packver 1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Quantum Genetic Algorithm | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5.0 | ||
| Requires: R-core >= 3.5.0 | ||
| BuildArch: noarch | ||
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| %description | ||
| Function that implements the Quantum Genetic Algorithm, first proposed by | ||
| Han and Kim in 2000. This is an R implementation of the 'python' | ||
| application developed by Lahoz-Beltra | ||
| (<https://github.com/ResearchCodesHub/QuantumGeneticAlgorithms>). Each | ||
| optimization problem is represented as a maximization one, where each | ||
| solution is a sequence of (qu)bits. Following the quantum paradigm, these | ||
| qubits are in a superposition state: when measuring them, they collapse in | ||
| a 0 or 1 state. After measurement, the fitness of the solution is | ||
| calculated as in usual genetic algorithms. The evolution at each iteration | ||
| is oriented by the application of two quantum gates to the amplitudes of | ||
| the qubits: (1) a rotation gate (always); (2) a Pauli-X gate (optionally). | ||
| The rotation is based on the theta angle values: higher values allow a | ||
| quicker evolution, and lower values avoid local maxima. The Pauli-X gate | ||
| is equivalent to the classical mutation operator and determines the swap | ||
| between alfa and beta amplitudes of a given qubit. The package has been | ||
| developed in such a way as to permit a complete separation between the | ||
| engine, and the particular problem subject to combinatorial optimization. | ||
|
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||
| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
|
||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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