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Remove perfectphyloR since it is no longer on CRAN (Fixes #17)
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willgearty authored Jun 4, 2024
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Expand Up @@ -258,7 +258,6 @@ See the `r view("Epidemiology")` task view for details about packages useful for
- `r pkg("aphylo")` implements a parsimonious evolutionary model to analyze and predict gene-functional annotations in phylogenetic trees.
- `r pkg("CALANGO")` can be used to search for annotation terms (e.g., Pfam IDs, GO terms or superfamilies) associated with a quantitative/rank variable.
- `r github("hr1912/TreeExp")` can be used to perform comparative analyses of gene expression in a phylogenetic context.
- `r pkg("perfectphyloR")` can construct perfect phylogenies (a rooted binary tree that recursively partitions sequences) to provide insight into the pattern of ancestry of sequence data.
- See the `r view("Omics")` task view for details about other useful packages.

### Gene tree--species tree and species delimitation
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