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Fix deprecation warnings #226

Fix deprecation warnings

Fix deprecation warnings #226

# Do a whole lock, render, and install cycle
name: integration-test
on:
pull_request:
push:
branches:
- main
concurrency:
# Concurrency group that uses the workflow name and PR number if available
# or commit SHA as a fallback. If a new build is triggered under that
# concurrency group while a previous build is running it will be canceled.
# Repeated pushes to a PR will cancel all previous builds, while multiple
# merges to main will not cancel.
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }}
cancel-in-progress: true
env:
MICROMAMBA_VERSION: 'latest'
defaults:
run:
shell: bash -elx {0}
jobs:
lock-gdal:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ "3.8", "3.12" ]
steps:
- name: Set Conda platform
run: |
if [ "$RUNNER_OS" == "Linux" ]; then
echo "CONDA_PLATFORM=linux-64" >> $GITHUB_ENV
elif [ "$RUNNER_OS" == "macOS" ]; then
echo "CONDA_PLATFORM=osx-arm64" >> $GITHUB_ENV
elif [ "$RUNNER_OS" == "Windows" ]; then
echo "CONDA_PLATFORM=win-64" >> $GITHUB_ENV
fi
- name: Verify Conda platform
run: echo "Conda platform is $CONDA_PLATFORM"
- uses: actions/checkout@eef61447b9ff4aafe5dcd4e0bbf5d482be7e7871 # v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: install conda-lock
run: |
pip install pipx
pipx install -e .
- name: run-test
run: |
conda-lock --log-level=DEBUG --mamba -f tests/gdal/environment.yml -p $CONDA_PLATFORM
conda-lock render -p $CONDA_PLATFORM
conda-lock render -p $CONDA_PLATFORM --kind=env
cat conda-$CONDA_PLATFORM.lock
cat conda-$CONDA_PLATFORM.lock.yml
cat conda-lock.yml
mkdir lockfiles
mv conda-$CONDA_PLATFORM.lock conda-$CONDA_PLATFORM.lock.yml conda-lock.yml lockfiles
- name: Upload lockfiles
uses: actions/upload-artifact@v4
with:
name: conda-lock-${{ matrix.os }}-${{ matrix.python-version }}
path: lockfiles
install-gdal-with-micromamba:
runs-on: ${{ matrix.os }}
needs: lock-gdal
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ "3.8" ]
steps:
- name: Install Conda environment with Micromamba
uses: mamba-org/setup-micromamba@v2
with:
# # Temporarily pin the version due to
# # <https://github.com/mamba-org/mamba/issues/3467>
# micromamba-version: ${{ env.MICROMAMBA_VERSION }}
micromamba-version: 1.5.10-0
init-shell: bash
- name: Download lockfiles
uses: actions/download-artifact@v4
with:
name: conda-lock-${{ matrix.os }}-${{ matrix.python-version }}
path: lockfiles
- name: Install GDAL with Micromamba
run: |
micromamba create -y -n gdal-test-mm-lock -f lockfiles/conda-lock.yml
micromamba create -y -n gdal-test-mm-explicit -f lockfiles/conda-*.lock
micromamba create -y -n gdal-test-mm-env -f lockfiles/conda-*.lock.yml
micromamba run -n gdal-test-mm-lock gdalinfo --version
micromamba run -n gdal-test-mm-explicit gdalinfo --version
micromamba run -n gdal-test-mm-env gdalinfo --version
micromamba run -n gdal-test-mm-lock python -c 'import toolz; print(toolz.__version__)'
# Micromamba won't install pip dependencies from explicit lockfiles, so skip this test
micromamba run -n gdal-test-mm-env python -c 'import toolz; print(toolz.__version__)'
install-gdal-with-conda-lock:
runs-on: ${{ matrix.os }}
needs: lock-gdal
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ "3.8", "3.12" ]
steps:
- uses: actions/checkout@eef61447b9ff4aafe5dcd4e0bbf5d482be7e7871 # v4
- uses: conda-incubator/setup-miniconda@v3
with:
auto-activate-base: true
python-version: ${{ matrix.python-version }}
- name: install conda-lock
run: |
pip install pipx
pipx install -e .
- name: Download lockfiles
uses: actions/download-artifact@v4
with:
name: conda-lock-${{ matrix.os }}-${{ matrix.python-version }}
path: lockfiles
- name: Install GDAL with conda-lock
run: |
conda-lock install --log-level=DEBUG -n gdal-test-cl-lock lockfiles/conda-lock.yml
conda-lock install --log-level=DEBUG -n gdal-test-cl-explicit lockfiles/conda-*.lock
conda-lock install --log-level=DEBUG -n gdal-test-cl-env lockfiles/conda-*.lock.yml
conda list -n gdal-test-cl-lock
conda run -n gdal-test-cl-lock gdalinfo --version
conda list -n gdal-test-cl-explicit
conda run -n gdal-test-cl-explicit gdalinfo --version
conda list -n gdal-test-cl-env
conda run -n gdal-test-cl-env gdalinfo --version
conda run -n gdal-test-cl-lock python -c 'import toolz; print(toolz.__version__)'
conda run -n gdal-test-cl-explicit python -c 'import toolz; print(toolz.__version__)'
conda run -n gdal-test-cl-env python -c 'import toolz; print(toolz.__version__)'
install-gdal-with-conda:
runs-on: ${{ matrix.os }}
needs: lock-gdal
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ "3.8" ]
steps:
- uses: conda-incubator/setup-miniconda@v3
with:
auto-activate-base: true
python-version: ${{ matrix.python-version }}
- name: Download lockfiles
uses: actions/download-artifact@v4
with:
name: conda-lock-${{ matrix.os }}-${{ matrix.python-version }}
path: lockfiles
- name: Install GDAL with conda
run: |
# conda doesn't recognize the unified lockfile format conda-lock.yml, so skip it.
# conda requires explicit lockfiles have a .txt extension
mv lockfiles/conda-*.lock lockfiles/explicit.txt
conda create -n gdal-test-c-explicit -c conda-forge --file lockfiles/explicit.txt
conda env create -n gdal-test-c-env --file lockfiles/conda-*.lock.yml
conda run -n gdal-test-c-explicit gdalinfo --version
conda run -n gdal-test-c-env gdalinfo --version
# conda doesn't install pip dependencies from explicit lockfiles, so skip this test
conda run -n gdal-test-c-env python -c 'import toolz; print(toolz.__version__)'