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@viralemergence @CHANGElab-AlbacoreTuna
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colebrookson/README.md

Hi I'm Cole πŸ‘‹

I am a computational biologist, currently a PhD student in the Carlson lab at Yale University, and with the Verena Institute. Feel free to call me any pronouns, but I typically use he/him or they/them.

My PhD research is mostly thinking about how we can understand and predict viral spillover risk. I also think a lot about food webs, fisheries, and the theory behind ecological forecasting πŸ“ˆ. I also have active research projects on computational pedagogy and metascience regarding publishing and equity in ecology specifically.

I am extremely passionate about open science and computational literacy in the biological sciences, and I teach introductory workshop series in programming and reproducibility methods for undergrad and grad students. πŸ–₯️ I built and (sort of) maintain the UofT R Manual which is a great intro resource for those new to R.

Here on my GitHub are all the projects I'm working on, a bit of a mixture of research projects and teaching materials. Also even though I'm not a software person by trade, I do love building little tools and fun projects for myself, as well as learning new languages.

You can learn more about me and my various research projects here

I absolutely love talking about software, statistical quandries, and fun ecological problems. If you think we have similar interests, reach out and let's have a virtual or in-person coffee β˜•

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  1. trait-based-rewiring trait-based-rewiring Public

    How do trait-based food webs rewire when they're subjected to different types of stressors? πŸ“‰ πŸ“ˆ

    HTML

  2. eeb-r-manual eeb-r-manual Public

    Code, text, notes, and infrastructure to support the R manual for undergraduate students in the Ecology & Evolutionary Biology department at the University of Toronto πŸ–₯️

    HTML 2

  3. r-for-biology r-for-biology Public

    All material for the "Introduction to Programming in R for Biology" workshop series πŸ’»

    HTML

  4. sea-lice-sr sea-lice-sr Public

    How do sea lice on wild and farmed salmon affect the population dynamics of wild pacific salmon? 🐟

    R

  5. kx-sea-lice kx-sea-lice Public

    Stock-recruit models for the effect of sea lice on wild salmon returns in the Kitasoo / Xai’xais nation

    R

  6. coral-restoration coral-restoration Public

    When is coral restoration viable for conservation 🐟πŸ