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Update README.md
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mtisza1 committed Jun 23, 2023
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Expand Up @@ -73,8 +73,6 @@ should return `8e207e6a9465d7e40e948d7559b014c4`

`rm DB_v2.0.2.tar.gz`

NOTE: If you had to download the database files outside of the `EsViritu` repo directory, remember to use `--db` flag when running the tool, or set the ESVIRITU_DB variable in the conda environment e.g.:

8) Set the database path:

`conda env config vars set ESVIRITU_DB=/path/to/DBs/v2.0.2`
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rm GCF_000819615.1_ViralProj14015_genomic.fna GCF_009914755.1_T2T-CHM13v2.0_genomic.fna
## set the filter_seqs directory as an environmental variable
`conda env config vars set ESVIRITU_FILTER=/path/to/filter_seqs`
conda env config vars set ESVIRITU_FILTER=/path/to/filter_seqs
```

Remember to set `-f True` to run the filtering step.
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