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@clinicalml

Sontag Lab

Machine learning algorithms and applications to health care.

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  1. structuredinference structuredinference Public

    Structured Inference Networks for Nonlinear State Space Models

    Jupyter Notebook 260 66

  2. embeddings embeddings Public

    Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"

    Python 242 77

  3. cfrnet cfrnet Public

    Counterfactual Regression

    Python 282 80

  4. HealthKnowledgeGraph HealthKnowledgeGraph Public

    Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data

    88 29

  5. omop-learn omop-learn Public

    Python package for machine learning for healthcare using a OMOP common data model

    Python 98 24

  6. prancer prancer Public

    Platform enabling Rapid Annotation for Clinical Entity Recognition

    JavaScript 47 12

Repositories

Showing 10 of 59 repositories
  • finding-decision-heterogeneity-regions Public

    Code for "Finding Regions of Heterogeneity in Decision-Making via Expected Conditional Covariance" at NeurIPS 2021

    clinicalml/finding-decision-heterogeneity-regions’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jun 18, 2024
  • clinicalml/realhumaneval’s past year of commit activity
    Jupyter Notebook 11 CC0-1.0 1 0 0 Updated Jun 13, 2024
  • clinicalml-scBERT-NMI Public

    analysis code to reproduce results in NMI submission

    clinicalml/clinicalml-scBERT-NMI’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 1 0 0 Updated Jun 1, 2024
  • co-llm Public
    clinicalml/co-llm’s past year of commit activity
    Python 83 7 1 0 Updated May 7, 2024
  • sc-foundation-eval Public

    Code for evaluating single cell foundation models scBERT and scGPT

    clinicalml/sc-foundation-eval’s past year of commit activity
    Jupyter Notebook 24 4 2 0 Updated Apr 26, 2024
  • onboarding_human_ai Public

    Onboarding Humans to work with AI: Algorithms to find regions and describe them in natural language that show how humans should collaborate with AI (NeurIPS23)

    clinicalml/onboarding_human_ai’s past year of commit activity
    Jupyter Notebook 9 3 0 0 Updated Mar 15, 2024
  • SCOPE Public Forked from edebrouwer/SCOPE

    Codebase for SCOPE architecture.

    clinicalml/SCOPE’s past year of commit activity
    Python 0 1 0 0 Updated Feb 7, 2024
  • human_ai_deferral Public

    Human-AI Deferral Evaluation Benchmark (Learning to Defer) AISTATS23

    clinicalml/human_ai_deferral’s past year of commit activity
    Python 18 1 1 0 Updated Jan 8, 2024
  • teaching-to-understand-ai Public

    Code and webpages for our study on teaching humans to defer to an AI

    clinicalml/teaching-to-understand-ai’s past year of commit activity
    Jupyter Notebook 11 0 0 0 Updated Nov 6, 2023
  • TabLLM Public
    clinicalml/TabLLM’s past year of commit activity
    Python 252 MIT 41 14 0 Updated Nov 2, 2023

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