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1. NeuroDesk/neurocontainers NeuroDesk/neurocontainers Public

   The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines

   Shell 22 55

2. HCP-dMRI-connectome HCP-dMRI-connectome Public

   MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRI data

   Shell 15 7

3. sovabids sovabids Public

   Forked from yjmantilla/sovabids

   A python package for the automatic conversion of EEG datasets to the BIDS standard, with a focus on making the most out of metadata.

   Python

4. show_connectome show_connectome Public

   Visualise connectivity matrices in the browser via Google Colab (no installation necessary and data is not shared with a 3rd party)

   Jupyter Notebook

5. mfcsc mfcsc Public

   MFCSC: Novel method to calculate mismatch between functional and structural brain connectomes

   MATLAB 1 2

6. mrtrix3 mrtrix3 Public

   Forked from MRtrix3/mrtrix3

   MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…

   C++