Merge pull request #138 from moorepants/new-dep-versions

Update Github actions to new versions and runon Python 3.8+.

.github/workflows/runtests.yml

@@ -1,43 +1,44 @@
 name: Run tests and build docs
-
 on:
   push:
     branches: master
   pull_request:
     branches: master
-
 jobs:
   build:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
     strategy:
       fail-fast: false
       matrix:
-        python: ['3.7', '3.8', '3.9', '3.10']
-
+        python: ['3.8', '3.9', '3.10', '3.11', '3.12']
     steps:
-    - uses: actions/checkout@v2
-
+    - name: Set up Git repository
+      uses: actions/checkout@v4
     - name: Install Conda environment with Micromamba
-      uses: mamba-org/provision-with-micromamba@main
+      uses: conda-incubator/setup-miniconda@v3
       with:
-        cache-downloads: true
-        cache-env: true
+        auto-update-conda: true
+        python-version: ${{ matrix.python }}
         environment-file: yeadon-dev-env.yml
-        environment-name: yeadon-dev
-        extrax-specs: |
-          python=${{ matrix.python }}
-
-    - name: Run the tests
+        activate-environment: yeadon-dev
+        miniforge-version: latest
+    - name: Run nose
       shell: bash -l {0}
+      if: ${{ matrix.python != '3.12' }}
       run: |
         nosetests -v --with-coverage --cover-package=yeadon
-
+    - name: Run pytest
+      shell: bash -l {0}
+      if: ${{ matrix.python == '3.12' }}
+      run: |
+        conda install pytest
+        coverage run -m pytest yeadon
     - name: Build the documentation
       shell: bash -l {0}
       run: |
         cd doc && make html
-
     - name: Install the software
       shell: bash -l {0}
       run: |
         python setup.py install
+        yeadon -h

README.rst

@@ -46,7 +46,7 @@ Directories
 Installing
 ==========
 
-This package was developed for Python 3.7+.
+This package was developed for Python 3.8+.
 
 Dependencies
 ------------
@@ -107,9 +107,9 @@ This option is required if you want to use `yeadon` in a virtualenv. You can
 build the dependencies from source and then install them by using a tool like
 `pip`::
 
-    $ python -m pip install numpy PyYAML
-    $ python -m pip install nose sphinx mayavi
-    $ python -m pip install numpydoc
+    $ python -m pip install numpy PyYAML  # required
+    $ python -m pip install mayavi  # optional
+    $ python -m pip install nose sphinx numpydoc  # development tools
 
 or you can obtain the source code, perhaps from GitHub_, and install the
 packages manually.
@@ -123,13 +123,13 @@ Once you've obtained the dependencies, you can install `yeadon`. The
 easiest way to download and install the `yeadon` package is by using a tool
 like `pip` to obtain the package from the Python Package Index (PyPi)::
 
-   $ python -m pip install yeadon # sudo if system install
+   $ python -m pip install yeadon
 
 You can also obtain an archive of the package at the Python Package Index
 (`<https://pypi.python.org/pypi/yeadon>`_), and then install the package on your
 own by executing the following from the root directory of the package::
 
-   $ python setup.py install # sudo if system install
+   $ python setup.py install
 
 On Unix, you can obtain the package source code and install it without leaving
 your terminal::
@@ -138,7 +138,7 @@ your terminal::
    $ wget https://pypi.python.org/packages/source/y/yeadon/yeadon-X.X.X.tar.gz
    $ tar -zxfv yeadon-X.X.X.tar.gz
    $ cd yeadon-X.X.X.tar.gz
-   $ python setup.py install # sudo if system install
+   $ python setup.py install
 
 Run the tests with::
 

doc/conf.py

@@ -238,4 +238,4 @@
 
 
 # Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {'http://docs.python.org/': None}
+intersphinx_mapping = {'python': ('http://docs.python.org/', None)}

requirements.txt

@@ -1,3 +1,3 @@
-numpy>=1.16.5
-pyyaml>=5.3.1
-numpydoc>=0.7.0
+numpy>=1.21.5
+pyyaml>=5.4.1
+numpydoc>=1.2

setup.py

@@ -15,11 +15,11 @@
     keywords="human inertia yeadon sports biomechanics gymnastics",
     license='LICENSE.txt',
     packages=find_packages(),
-    # NOTE : The minimum versions correspond to those in Ubuntu 20.04 LTS.
-    install_requires=['numpy>=1.16.5',
-                      'pyyaml>=5.3.1'],
+    # NOTE : The minimum versions correspond to those in Ubuntu 22.04 LTS.
+    install_requires=['numpy>=1.21.5',
+                      'pyyaml>=5.4.1'],
     extras_require={'gui': ['mayavi>=4.7.1'],
-                    'doc': ['sphinx>=1.8.5', 'numpydoc>=0.7.0']},
+                    'doc': ['sphinx>=4.3.2', 'numpydoc>=1.2']},
     tests_require=['nose>=1.3.7'],
     test_suite='nose.collector',
     include_package_data=True,
@@ -28,10 +28,11 @@
         'Development Status :: 5 - Production/Stable',
         'Intended Audience :: Science/Research',
         'Operating System :: OS Independent',
-        'Programming Language :: Python :: 3.7',
         'Programming Language :: Python :: 3.8',
         'Programming Language :: Python :: 3.9',
         'Programming Language :: Python :: 3.10',
+        'Programming Language :: Python :: 3.11',
+        'Programming Language :: Python :: 3.12',
         'Topic :: Scientific/Engineering :: Physics',
-        ],
+    ],
 )

yeadon-dev-env.yml

@@ -1,12 +1,12 @@
 name: yeadon-dev
 channels:
   - conda-forge
-# NOTE : The minimum versions correspond to those in Ubuntu 20.04 LTS.
+# NOTE : The minimum versions correspond to those in Ubuntu 22.04 LTS.
 dependencies:
-  - coverage >=4.5.2
+  - coverage >=6.2
   - nose >=1.3.7
-  - numpy >=1.16.5
-  - numpydoc >=0.7.0
-  - pyyaml >=5.3.1
-  - setuptools >=44.0.0
-  - sphinx >=1.8.5
+  - numpy >=1.21.5
+  - numpydoc >=1.2
+  - pyyaml >=5.4.1
+  - setuptools >=59.6.0
+  - sphinx >=4.3.2