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chrarnold/README.md

Data Scientist, Bioinformatician, Tool developer and Snakemake enthusiast

LinkedIn: @chrarnold84

My activities and repositories

My main repositories from the last years are not here but at a public institutional Gitlab instance at EMBL. While some are public, others are currently not accessible publicly, however.

Selected recent highlights include:

One of my all-time favorite projects resulted in a high-impact publication, including a designated webserver that I programmed (as of January 2024, the SSL certificate is being renewed by the university):

During my PhD, I was more heavily involved in algorithm development and biological/chemical simulations, which resulted in the following software, for example:

As a developer, I am aware of the importance of identifying bugs in code. Therefore, I am also reporting bugs in various bioinformatics tools whenever I identify them. By now, I indirectly contributed to many bioinformatics-focused repositories and programs (such as samtools, Snakemake, bedtools, and various R packages).

Contact

If you're interested in my work, my future plan, how I could you with your project, I'd love to chat. I am currently working at EMBL in Heidelberg. See above for how to contact me.

Popular repositories Loading

  1. Singularity_images Singularity_images Public

    A collection of Singularity images

  2. chrarnold chrarnold Public

  3. task_grn_benchmark task_grn_benchmark Public

    Forked from openproblems-bio/task_grn_inference

    Jupyter Notebook