chore: update dependencies (#217)

package.json

@@ -33,21 +33,21 @@
   },
   "homepage": "https://github.com/cheminfo/mass-tools#readme",
   "devDependencies": {
-    "@babel/plugin-transform-modules-commonjs": "^7.24.7",
-    "@types/jest": "^29.5.12",
+    "@babel/plugin-transform-modules-commonjs": "^7.25.7",
+    "@types/jest": "^29.5.13",
     "@types/node": "^20.14.10",
-    "@vitest/coverage-v8": "^2.0.1",
+    "@vitest/coverage-v8": "^2.1.3",
     "benchmark": "^2.1.4",
     "cheminfo-build": "^1.2.0",
     "documentation": "^14.0.3",
     "eslint": "^8.54.0",
     "eslint-config-cheminfo": "^11.0.3",
-    "globals": "^15.8.0",
+    "globals": "^15.11.0",
     "jest-matcher-deep-close-to": "^3.0.2",
-    "lerna": "^8.1.6",
-    "msw": "^2.3.1",
-    "prettier": "^3.3.2",
-    "typescript": "^5.5.3",
-    "vitest": "^2.0.1"
+    "lerna": "^8.1.8",
+    "msw": "^2.4.11",
+    "prettier": "^3.3.3",
+    "typescript": "^5.6.3",
+    "vitest": "^2.1.3"
   }
 }

packages/chemical-elements/package.json

@@ -21,6 +21,6 @@
   "homepage": "https://github.com/cheminfo/mass-tools/tree/main/packages/chemical-elements#readme",
   "devDependencies": {
     "papaparse": "^5.4.1",
-    "wikidata-sdk": "^8.1.0"
+    "wikidata-sdk": "^8.1.1"
   }
 }

packages/emdb/package.json

@@ -32,16 +32,16 @@
     "mf-parser": "^3.2.4",
     "mf-utilities": "^3.2.4",
     "ml-regression-theil-sen": "^3.0.0",
-    "ml-spectra-processing": "^14.5.1",
+    "ml-spectra-processing": "^14.6.0",
     "ms-spectrum": "^3.6.7",
     "nucleotide": "^3.1.5",
-    "openchemlib-utils": "^6.3.0",
+    "openchemlib-utils": "^6.4.1",
     "peaks-similarity": "^3.1.1",
     "peptide": "^2.2.2"
   },
   "devDependencies": {
     "jest-matcher-deep-close-to": "^3.0.2",
-    "openchemlib": "^8.14.0",
+    "openchemlib": "^8.15.0",
     "xy-parser": "^5.0.5"
   }
 }

packages/mass-fragmentation/package.json

@@ -21,11 +21,11 @@
   "homepage": "https://github.com/cheminfo/mass-tools/tree/main/packages/mass-fragmentation#readme",
   "dependencies": {
     "mf-parser": "^3.2.4",
-    "openchemlib-utils": "^6.3.0",
-    "react-tree-svg": "^1.0.0"
+    "openchemlib-utils": "^6.4.1",
+    "react-tree-svg": "^1.4.0"
   },
   "devDependencies": {
     "jsdom": "^25.0.1",
-    "openchemlib": "^8.14.0"
+    "openchemlib": "^8.15.0"
   }
 }

packages/mf-matcher/package.json

@@ -21,7 +21,7 @@
   "homepage": "https://github.com/cheminfo/mass-tools/tree/main/packages/mf-matcher#readme",
   "dependencies": {
     "mf-utilities": "^3.2.4",
-    "ml-spectra-processing": "^14.5.1"
+    "ml-spectra-processing": "^14.6.0"
   },
   "devDependencies": {
     "jest-matcher-deep-close-to": "^3.0.2"

packages/mfs-deconvolution/package.json

@@ -21,12 +21,12 @@
   "homepage": "https://github.com/cheminfo/mass-tools/tree/main/packages/emdb#readme",
   "dependencies": {
     "@lukeed/uuid": "^2.0.1",
-    "cheminfo-types": "^1.7.3",
+    "cheminfo-types": "^1.8.0",
     "isotopic-distribution": "^3.3.2",
     "mf-generator": "^3.3.4",
     "ml-fcnnls": "^2.1.0",
     "ml-matrix": "^6.11.1",
-    "ml-spectra-processing": "^14.5.1",
+    "ml-spectra-processing": "^14.6.0",
     "ms-spectrum": "^3.6.7"
   },
   "devDependencies": {

packages/ms-spectrum/package.json

@@ -20,14 +20,14 @@
   },
   "homepage": "https://github.com/cheminfo/mass-tools/tree/main/packages/emdb#readme",
   "dependencies": {
-    "cheminfo-types": "^1.7.3",
+    "cheminfo-types": "^1.8.0",
     "emdb": "^3.3.7",
     "is-any-array": "^2.0.1",
     "mf-parser": "^3.2.4",
     "mf-utilities": "^3.2.4",
-    "ml-gsd": "^12.1.6",
+    "ml-gsd": "^12.1.8",
     "ml-regression-power": "^3.0.0",
-    "ml-spectra-processing": "^14.5.1",
+    "ml-spectra-processing": "^14.6.0",
     "peaks-similarity": "^3.1.1",
     "xy-parser": "^5.0.5"
   },

packages/octochemdb/package.json

@@ -28,6 +28,6 @@
     "mf-parser": "^3.2.4",
     "mf-utilities": "^3.2.4",
     "ms-spectrum": "^3.6.7",
-    "react-tree-svg": "^1.0.0"
+    "react-tree-svg": "^1.4.0"
   }
 }