cellxgene-schema CLI must validate Caenorhabditis elegans

[brianraymor]

Context

Please see schema 5.3.0 for full requirements.

schema v5.3.0

• Required Ontologies
  • Added C. elegans Development Ontology (WBls) release 2024-09-26 Wormbase WS295
  • Added C. elegans Gross Anatomy Ontology (WBbt) release 2024-09-24 Wormbase WS295
• Required Gene Annotations
  • Added Caenorhabditis elegans WBcel235 (GCA_000002985.3) Ensembl 113
• obs (Cell metadata)
  • Updated the ontology requirements for cell_type_ontology_term_id to include:
    • WBbt for Caenorhabditis elegans
  • Updated the ontology requirements for development_stage_ontology_term_id to include:
    • WBls for Caenorhabditis elegans
  • Updated the requirements for organism_ontology_term_id to limit its values to a list of NCBITaxon terms
  • Updated the requirements for sex_ontology_term_id:
    • For Caenorhabditis elegans, values are limited to hermaphrodite, male, or "unknown"
  • Updated the ontology requirements for tissue_ontology_term_id to include:
    • WBbt for *Caenorhabditis elegans
• var and raw.var (Gene Metadata)
  • Updated feature_reference to include:
    • Caenorhabditis elegans