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feat: Migrating existing configs to include frame & ctf metadata #428

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@manasaV3 manasaV3 commented Feb 1, 2025

Relates to chanzuckerberg/cryoet-data-portal#1054

Depends on: #427

Description

  • Manually migrated the ctf entity
  • Updates the generated rawtlt and mdoc files as fallback
  • Adds migration to support frame_dose_rate

Notes:

  1. There is a dependency on file run_dose_rate_map.tsv to exist in https://github.com/czimaginginstitute/czii-data-portal-processing/tree/main/src/data_portal_processing/jensendb containing a mapping of all run names to frame dose rating.

  2. The failure of the ingestion config validation is expected due invalid stub placeholder, as a remainder to update these frame dose rate values. Do not merge until all the errors have been addressed.

@manasaV3 manasaV3 requested review from jgadling, Bento007 and uermel and removed request for jgadling February 1, 2025 00:56
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