fix generation #4

	name: Updates Curated Lists

	on:
	push:
	paths:
	- "**/tools/ontology-builder/src/curated_lists.py"
	branches-ignore:
	- main

	jobs:
	ontology-processing:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v3
	with:
	ref: ${{ github.event.pull_request.head.ref }}
	- name: Set up Python 3.8
	uses: actions/setup-python@v1
	with:
	python-version: 3.8
	- name: Python cache
	uses: actions/cache@v1
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('*/requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	- name: install requirements
	run: \|
	pip install -r tools/ontology-builder/requirements.txt
	- name: setup git
	run: \|
	git config user.name github-actions
	git config user.email [email protected]
	- name: ontology-processing
	run: \|
	python3 ./tools/ontology-builder/src/curated_lists.py
	git add ./tools/ontology-builder/src/ontology-references/tissue_general_list.json
	git add ./tools/ontology-builder/src/ontology-references/organ_list.json
	git add ./tools/ontology-builder/src/ontology-references/cell_class_list.json
	git add ./tools/ontology-builder/src/ontology-references/cell_subclass_list.json
	git add ./tools/ontology-builder/src/ontology-references/system_list.json
	- name: Commit
	run: \|
	git commit -m "AUTO: update curated_lists"
	git push

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