bin/snakemake_mqsub: Use minimum 1G of RAM

centre-for-microbiome-research · Jan 14, 2025 · 0675f47 · 0675f47
1 parent 82cf28f
commit 0675f47
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/bin/snakemake_mqsub b/bin/snakemake_mqsub
@@ -82,6 +82,8 @@ if __name__ == '__main__':
     if 'mem_mb' in job_properties['resources']:
         mem_mb = job_properties['resources']['mem_mb']
         mem_gb = int(mem_mb / 1024)
+        if mem_gb < 1:
+            mem_gb = 1
         mem_argument = "-m {}".format(mem_gb)
     else:
         mem_argument = ''